3.1. Build LAMMPS with CMake

This page describes how to use CMake in general to build LAMMPS. Details for specific compile time settings and options to enable and configure add-on packages are discussed with those packages. Links to those pages on the Build overview page.

The following text assumes some familiarity with CMake and focuses on using the command line tool cmake and what settings are supported for building LAMMPS. A more detailed tutorial on how to use cmake itself, the text mode or graphical user interface, change the generated output files for different build tools and development environments is on a separate page.

Note

LAMMPS currently requires that CMake version 3.10 or later is available; version 3.12 or later is preferred.

Warning

You must not mix the traditional make based LAMMPS build procedure with using CMake. Thus no packages may be installed or a build been previously attempted in the LAMMPS source directory by using make <machine>. CMake will detect if this is the case and generate an error. To remove conflicting files from the src you can use the command make no-all purge which will un-install all packages and delete all auto-generated files.

3.1.1. Advantages of using CMake

CMake is an alternative to compiling LAMMPS in the traditional way through (manually customized) makefiles and a recent addition to LAMMPS thanks to the efforts of Christoph Junghans (LANL) and Richard Berger (Temple U). Using CMake has multiple advantages that are specifically helpful for people with limited experience in compiling software or for people that want to modify or extend LAMMPS.

  • CMake can detect available hardware, tools, features, and libraries and adapt the LAMMPS default build configuration accordingly.

  • CMake can generate files for different build tools and integrated development environments (IDE).

  • CMake supports customization of settings with a text mode or graphical user interface. No knowledge of file formats or and complex command line syntax required.

  • All enabled components are compiled in a single build operation.

  • Automated dependency tracking for all files and configuration options.

  • Support for true out-of-source compilation. Multiple configurations and settings with different choices of LAMMPS packages, settings, or compilers can be configured and built concurrently from the same source tree.

  • Simplified packaging of LAMMPS for Linux distributions, environment modules, or automated build tools like Homebrew.

  • Integration of automated regression testing (the LAMMPS side for that is still under development).

3.1.2. Getting started

Building LAMMPS with CMake is a two-step process. First you use CMake to generate a build environment in a new directory. For that purpose you can use either the command-line utility cmake (or cmake3), the text-mode UI utility ccmake (or ccmake3) or the graphical utility cmake-gui, or use them interchangeably. The second step is then the compilation and linking of all objects, libraries, and executables. Here is a minimal example using the command line version of CMake to build LAMMPS with no add-on packages enabled and no customization:

cd lammps                # change to the LAMMPS distribution directory
mkdir build; cd build    # create and use a build directory
cmake ../cmake           # configuration reading CMake scripts from ../cmake
cmake --build .          # compilation (or type "make")

This will create and change into a folder called build, then run the configuration step to generate build files for the default build command and then launch that build command to compile LAMMPS. During the configuration step CMake will try to detect whether support for MPI, OpenMP, FFTW, gzip, JPEG, PNG, and ffmpeg are available and enable the corresponding configuration settings. The progress of this configuration can be followed on the screen and a summary of selected options and settings will be printed at the end. The cmake --build . command will launch the compilation, which, if successful, will ultimately produce a library liblammps.a and the LAMMPS executable lmp inside the build folder.

Compilation can take a long time, since LAMMPS is a large project with many features. If your machine has multiple CPU cores (most do these days), you can speed this up by compiling sources in parallel with make -j N (with N being the maximum number of concurrently executed tasks). Also installation of the ccache (= Compiler Cache) software may speed up repeated compilation even more, e.g. during code development.

After the initial build, whenever you edit LAMMPS source files, enable or disable packages, change compiler flags or build options, you must re-compile and relink the LAMMPS executable with cmake --build . (or make). If the compilation fails for some reason, try running cmake . and then compile again. The included dependency tracking should make certain that only the necessary subset of files are re-compiled. You can also delete compiled objects, libraries and executables with cmake --build . --target clean (or make clean).

After compilation, you may optionally install the LAMMPS executable into your system with:

make install    # optional, copy compiled files into installation location

This will install the LAMMPS executable and library, some tools (if configured) and additional files like LAMMPS API headers, manpages, potential and force field files. The location of the installation tree defaults to ${HOME}/.local.

3.1.3. Configuration and build options

The CMake commands have one mandatory argument: a folder containing a file called CMakeLists.txt (for LAMMPS it is located in the cmake folder) or a build folder containing a file called CMakeCache.txt, which is generated at the end of the CMake configuration step. The cache file contains all current CMake settings.

To modify settings, enable or disable features, you need to set variables with either the -D command line flag (-D VARIABLE1_NAME=value) or change them in the text mode of graphical user interface. The -D flag can be used several times in one command.

For your convenience we provide CMake presets that combine multiple settings to enable optional LAMMPS packages or use a different compiler tool chain. Those are loaded with the -C flag (-C ../cmake/presets/minimal.cmake). This step would only be needed once, as the settings from the preset files are stored in the CMakeCache.txt file. It is also possible to customize the build by adding one or more -D flags to the CMake command line.

Generating files for alternate build tools (e.g. Ninja) and project files for IDEs like Eclipse, CodeBlocks, or Kate can be selected using the -G command line flag. A list of available generator settings for your specific CMake version is given when running cmake --help.

3.1.4. Installing CMake

Check if your machine already has CMake installed:

which cmake             # do you have it?
which cmake3            # version 3 may have this name
cmake --version         # what specific version you have

On clusters or supercomputers which use environment modules to manage software packages, do this:

module list            # is a module for cmake already loaded?
module avail           # is a module for cmake available?
module load cmake      # load cmake module with appropriate name

Most Linux distributions offer pre-compiled cmake packages through their package management system. If you do not have CMake or a recent enough version (Note: for CentOS 7.x you need to enable the EPEL repository), you can download the latest version from https://cmake.org/download/. Instructions on how to install it on various platforms can be found on this page.