MPI jobs within MPI jobs: A practical way of enabling task-level fault- tolerance in HPC workflows
JM Wozniak and M Dorier and R Ross and T Shu and T Kurc and L Tang and N Podhorszki and M Wolf, FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, 101, 576-589 (2019).
While the use of workflows for HPC is growing, MPI interoperability remains a challenge for workflow management systems. The MPI standard and/or its implementations provide a number of ways to build multiple- programs-multiple-data (MPMD) applications. These methods present limitations related to fault tolerance, and are not easy to use. In this paper, we advocate for a novel MPI_Comm_launch function acting as the parallel counterpart of a system(3) call. MPI_Comm_launch allows a child MPI application to be launched inside the resources originally held by processes of a parent MPI application. Two important aspects of MPI_Comm_launch is that it pauses the calling process, and runs the child processes on the parents CPU cores, but in an isolated manner with respect to memory. This function makes it easier to build MPMD applications with well-decoupled subtasks. We show how this feature can provide better flexibility and better fault tolerance in ensemble simulations and HPC workflows. We report results showing 2x throughput improvement for application workflows with faults, and scaling results for challenging workloads up to 256 nodes. (C) 2019 Published by Elsevier B.V.
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