|From:||Amir Hossein Saeedi <asaeedi@...7272...>|
|Date:||Thu, 21 Dec 2017 09:11:16 +0000|
Despite convenient features of VMD (topotool plugin) for building a data file, its still highly tremendous to assign the type to atoms of a large molecule, such as lipids.
My molecule is completely arbitrary, without any support by PDB website.
Is there any visual molecule builder to specify atom type in accord with a given Force Field?
I've tried Avogadro, but it lacks such option.
With Kind Regards
Saeedi Dehaghani Amir Hossein
Department of Petroleum Engineering
Faculty of Chemical Engineering
Tarbiat Modares UniversityAddress: Tarbiat Modares University, Jalal Ale Ahmad Highway, Gisha Bridge, Tehran, Iran
Tel: +98 21 82883350
Fax: +98 21 82883350