diff -Naur lammps-11Apr17/doc/html/.buildinfo lammps-13Apr17/doc/html/.buildinfo
--- lammps-11Apr17/doc/html/.buildinfo	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/.buildinfo	2017-04-13 11:35:03.774112702 -0600
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 3722af5f9f8753fa9808168a61b29dec
+config: 4d1b62745509d1cf7253d4d309d0df37
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff -Naur lammps-11Apr17/doc/html/Manual.html lammps-13Apr17/doc/html/Manual.html
--- lammps-11Apr17/doc/html/Manual.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/Manual.html	2017-04-13 11:35:03.807113683 -0600
@@ -120,7 +120,7 @@
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           <div role="navigation" aria-label="breadcrumbs navigation">
-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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@@ -149,7 +149,7 @@
   <H1></H1><div class="section" id="lammps-documentation">
 <h1>LAMMPS Documentation</h1>
 <div class="section" id="apr-2017-version">
-<h2>11 Apr 2017 version</h2>
+<h2>13 Apr 2017 version</h2>
 </div>
 <div class="section" id="version-info">
 <h2>Version info:</h2>
diff -Naur lammps-11Apr17/doc/html/Section_accelerate.html lammps-13Apr17/doc/html/Section_accelerate.html
--- lammps-11Apr17/doc/html/Section_accelerate.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/Section_accelerate.html	2017-04-13 11:35:03.813113864 -0600
@@ -134,7 +134,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/Section_commands.html lammps-13Apr17/doc/html/Section_commands.html
--- lammps-11Apr17/doc/html/Section_commands.html	2017-04-11 09:01:35.000000000 -0600
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/Section_errors.html lammps-13Apr17/doc/html/Section_errors.html
--- lammps-11Apr17/doc/html/Section_errors.html	2017-04-11 09:01:35.000000000 -0600
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/Section_example.html lammps-13Apr17/doc/html/Section_example.html
--- lammps-11Apr17/doc/html/Section_example.html	2017-04-11 09:01:35.000000000 -0600
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@@ -125,7 +125,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/Section_history.html lammps-13Apr17/doc/html/Section_history.html
--- lammps-11Apr17/doc/html/Section_history.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/Section_history.html	2017-04-13 11:35:03.780112878 -0600
@@ -125,7 +125,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/Section_howto.html lammps-13Apr17/doc/html/Section_howto.html
--- lammps-11Apr17/doc/html/Section_howto.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/Section_howto.html	2017-04-13 11:35:03.782112940 -0600
@@ -176,7 +176,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/Section_intro.html lammps-13Apr17/doc/html/Section_intro.html
--- lammps-11Apr17/doc/html/Section_intro.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/Section_intro.html	2017-04-13 11:35:03.790113178 -0600
@@ -141,7 +141,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/Section_modify.html lammps-13Apr17/doc/html/Section_modify.html
--- lammps-11Apr17/doc/html/Section_modify.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/Section_modify.html	2017-04-13 11:35:03.808113712 -0600
@@ -138,7 +138,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/Section_packages.html lammps-13Apr17/doc/html/Section_packages.html
--- lammps-11Apr17/doc/html/Section_packages.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/Section_packages.html	2017-04-13 11:35:03.807113683 -0600
@@ -188,7 +188,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/Section_perf.html lammps-13Apr17/doc/html/Section_perf.html
--- lammps-11Apr17/doc/html/Section_perf.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/Section_perf.html	2017-04-13 11:35:03.780112878 -0600
@@ -121,7 +121,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/Section_python.html lammps-13Apr17/doc/html/Section_python.html
--- lammps-11Apr17/doc/html/Section_python.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/Section_python.html	2017-04-13 11:35:03.811113804 -0600
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/Section_start.html lammps-13Apr17/doc/html/Section_start.html
--- lammps-11Apr17/doc/html/Section_start.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/Section_start.html	2017-04-13 11:35:03.788113118 -0600
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/Section_tools.html lammps-13Apr17/doc/html/Section_tools.html
--- lammps-11Apr17/doc/html/Section_tools.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/Section_tools.html	2017-04-13 11:35:03.787113088 -0600
@@ -152,7 +152,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/accelerate_gpu.html lammps-13Apr17/doc/html/accelerate_gpu.html
--- lammps-11Apr17/doc/html/accelerate_gpu.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/accelerate_gpu.html	2017-04-13 11:35:03.790113178 -0600
@@ -138,7 +138,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/accelerate_intel.html lammps-13Apr17/doc/html/accelerate_intel.html
--- lammps-11Apr17/doc/html/accelerate_intel.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/accelerate_intel.html	2017-04-13 11:35:03.830114369 -0600
@@ -138,7 +138,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/accelerate_kokkos.html lammps-13Apr17/doc/html/accelerate_kokkos.html
--- lammps-11Apr17/doc/html/accelerate_kokkos.html	2017-04-11 09:01:35.000000000 -0600
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@@ -138,7 +138,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/accelerate_omp.html lammps-13Apr17/doc/html/accelerate_omp.html
--- lammps-11Apr17/doc/html/accelerate_omp.html	2017-04-11 09:01:35.000000000 -0600
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@@ -138,7 +138,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/accelerate_opt.html lammps-13Apr17/doc/html/accelerate_opt.html
--- lammps-11Apr17/doc/html/accelerate_opt.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/accelerate_opt.html	2017-04-13 11:35:03.829114338 -0600
@@ -138,7 +138,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/angle_charmm.html lammps-13Apr17/doc/html/angle_charmm.html
--- lammps-11Apr17/doc/html/angle_charmm.html	2017-04-11 09:01:35.000000000 -0600
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@@ -168,7 +168,7 @@
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/angle_class2.html lammps-13Apr17/doc/html/angle_class2.html
--- lammps-11Apr17/doc/html/angle_class2.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/angle_class2.html	2017-04-13 11:35:03.793113268 -0600
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/angle_coeff.html lammps-13Apr17/doc/html/angle_coeff.html
--- lammps-11Apr17/doc/html/angle_coeff.html	2017-04-11 09:01:35.000000000 -0600
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/angle_cosine.html lammps-13Apr17/doc/html/angle_cosine.html
--- lammps-11Apr17/doc/html/angle_cosine.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/angle_cosine.html	2017-04-13 11:35:03.774112702 -0600
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/angle_cosine_delta.html lammps-13Apr17/doc/html/angle_cosine_delta.html
--- lammps-11Apr17/doc/html/angle_cosine_delta.html	2017-04-11 09:01:35.000000000 -0600
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+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/angle_cosine_periodic.html lammps-13Apr17/doc/html/angle_cosine_periodic.html
--- lammps-11Apr17/doc/html/angle_cosine_periodic.html	2017-04-11 09:01:35.000000000 -0600
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/angle_cosine_shift.html lammps-13Apr17/doc/html/angle_cosine_shift.html
--- lammps-11Apr17/doc/html/angle_cosine_shift.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/dump_custom_vtk.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/dump_h5md.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/dump_image.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_addforce.html lammps-13Apr17/doc/html/fix_addforce.html
--- lammps-11Apr17/doc/html/fix_addforce.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_addtorque.html lammps-13Apr17/doc/html/fix_addtorque.html
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diff -Naur lammps-11Apr17/doc/html/fix_append_atoms.html lammps-13Apr17/doc/html/fix_append_atoms.html
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diff -Naur lammps-11Apr17/doc/html/fix_atom_swap.html lammps-13Apr17/doc/html/fix_atom_swap.html
--- lammps-11Apr17/doc/html/fix_atom_swap.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_ave_atom.html lammps-13Apr17/doc/html/fix_ave_atom.html
--- lammps-11Apr17/doc/html/fix_ave_atom.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_ave_correlate.html lammps-13Apr17/doc/html/fix_ave_correlate.html
--- lammps-11Apr17/doc/html/fix_ave_correlate.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_ave_histo.html lammps-13Apr17/doc/html/fix_ave_histo.html
--- lammps-11Apr17/doc/html/fix_ave_histo.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_ave_time.html lammps-13Apr17/doc/html/fix_ave_time.html
--- lammps-11Apr17/doc/html/fix_ave_time.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_aveforce.html lammps-13Apr17/doc/html/fix_aveforce.html
--- lammps-11Apr17/doc/html/fix_aveforce.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_balance.html lammps-13Apr17/doc/html/fix_balance.html
--- lammps-11Apr17/doc/html/fix_balance.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_bond_break.html lammps-13Apr17/doc/html/fix_bond_break.html
--- lammps-11Apr17/doc/html/fix_bond_break.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_bond_create.html lammps-13Apr17/doc/html/fix_bond_create.html
--- lammps-11Apr17/doc/html/fix_bond_create.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_bond_swap.html lammps-13Apr17/doc/html/fix_bond_swap.html
--- lammps-11Apr17/doc/html/fix_bond_swap.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_box_relax.html lammps-13Apr17/doc/html/fix_box_relax.html
--- lammps-11Apr17/doc/html/fix_box_relax.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_cmap.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_colvars.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_controller.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_deform.html lammps-13Apr17/doc/html/fix_deform.html
--- lammps-11Apr17/doc/html/fix_deform.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_deposit.html lammps-13Apr17/doc/html/fix_deposit.html
--- lammps-11Apr17/doc/html/fix_deposit.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_dpd_energy.html lammps-13Apr17/doc/html/fix_dpd_energy.html
--- lammps-11Apr17/doc/html/fix_dpd_energy.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_drag.html lammps-13Apr17/doc/html/fix_drag.html
--- lammps-11Apr17/doc/html/fix_drag.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_drude.html lammps-13Apr17/doc/html/fix_drude.html
--- lammps-11Apr17/doc/html/fix_drude.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_drude_transform.html lammps-13Apr17/doc/html/fix_drude_transform.html
--- lammps-11Apr17/doc/html/fix_drude_transform.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_dt_reset.html lammps-13Apr17/doc/html/fix_dt_reset.html
--- lammps-11Apr17/doc/html/fix_dt_reset.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_efield.html lammps-13Apr17/doc/html/fix_efield.html
--- lammps-11Apr17/doc/html/fix_efield.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_ehex.html lammps-13Apr17/doc/html/fix_ehex.html
--- lammps-11Apr17/doc/html/fix_ehex.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_enforce2d.html lammps-13Apr17/doc/html/fix_enforce2d.html
--- lammps-11Apr17/doc/html/fix_enforce2d.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_eos_cv.html lammps-13Apr17/doc/html/fix_eos_cv.html
--- lammps-11Apr17/doc/html/fix_eos_cv.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_eos_table.html lammps-13Apr17/doc/html/fix_eos_table.html
--- lammps-11Apr17/doc/html/fix_eos_table.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_eos_table_rx.html lammps-13Apr17/doc/html/fix_eos_table_rx.html
--- lammps-11Apr17/doc/html/fix_eos_table_rx.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_evaporate.html lammps-13Apr17/doc/html/fix_evaporate.html
--- lammps-11Apr17/doc/html/fix_evaporate.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_external.html lammps-13Apr17/doc/html/fix_external.html
--- lammps-11Apr17/doc/html/fix_external.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_filter_corotate.html lammps-13Apr17/doc/html/fix_filter_corotate.html
--- lammps-11Apr17/doc/html/fix_filter_corotate.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_flow_gauss.html lammps-13Apr17/doc/html/fix_flow_gauss.html
--- lammps-11Apr17/doc/html/fix_flow_gauss.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_freeze.html lammps-13Apr17/doc/html/fix_freeze.html
--- lammps-11Apr17/doc/html/fix_freeze.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_gcmc.html lammps-13Apr17/doc/html/fix_gcmc.html
--- lammps-11Apr17/doc/html/fix_gcmc.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_gld.html lammps-13Apr17/doc/html/fix_gld.html
--- lammps-11Apr17/doc/html/fix_gld.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_gle.html lammps-13Apr17/doc/html/fix_gle.html
--- lammps-11Apr17/doc/html/fix_gle.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_gravity.html lammps-13Apr17/doc/html/fix_gravity.html
--- lammps-11Apr17/doc/html/fix_gravity.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_grem.html lammps-13Apr17/doc/html/fix_grem.html
--- lammps-11Apr17/doc/html/fix_grem.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_halt.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_heat.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_imd.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_ipi.html lammps-13Apr17/doc/html/fix_ipi.html
--- lammps-11Apr17/doc/html/fix_ipi.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_langevin.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_langevin_drude.html lammps-13Apr17/doc/html/fix_langevin_drude.html
--- lammps-11Apr17/doc/html/fix_langevin_drude.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_langevin_eff.html lammps-13Apr17/doc/html/fix_langevin_eff.html
--- lammps-11Apr17/doc/html/fix_langevin_eff.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_lb_fluid.html lammps-13Apr17/doc/html/fix_lb_fluid.html
--- lammps-11Apr17/doc/html/fix_lb_fluid.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_lb_momentum.html lammps-13Apr17/doc/html/fix_lb_momentum.html
--- lammps-11Apr17/doc/html/fix_lb_momentum.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_lb_pc.html lammps-13Apr17/doc/html/fix_lb_pc.html
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diff -Naur lammps-11Apr17/doc/html/fix_lb_rigid_pc_sphere.html lammps-13Apr17/doc/html/fix_lb_rigid_pc_sphere.html
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diff -Naur lammps-11Apr17/doc/html/fix_lb_viscous.html lammps-13Apr17/doc/html/fix_lb_viscous.html
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diff -Naur lammps-11Apr17/doc/html/fix_lineforce.html lammps-13Apr17/doc/html/fix_lineforce.html
--- lammps-11Apr17/doc/html/fix_lineforce.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_manifoldforce.html lammps-13Apr17/doc/html/fix_manifoldforce.html
--- lammps-11Apr17/doc/html/fix_manifoldforce.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_meso.html lammps-13Apr17/doc/html/fix_meso.html
--- lammps-11Apr17/doc/html/fix_meso.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_meso_stationary.html lammps-13Apr17/doc/html/fix_meso_stationary.html
--- lammps-11Apr17/doc/html/fix_meso_stationary.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_modify.html lammps-13Apr17/doc/html/fix_modify.html
--- lammps-11Apr17/doc/html/fix_modify.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_momentum.html lammps-13Apr17/doc/html/fix_momentum.html
--- lammps-11Apr17/doc/html/fix_momentum.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_move.html lammps-13Apr17/doc/html/fix_move.html
--- lammps-11Apr17/doc/html/fix_move.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_mscg.html lammps-13Apr17/doc/html/fix_mscg.html
--- lammps-11Apr17/doc/html/fix_mscg.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_msst.html lammps-13Apr17/doc/html/fix_msst.html
--- lammps-11Apr17/doc/html/fix_msst.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_neb.html lammps-13Apr17/doc/html/fix_neb.html
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diff -Naur lammps-11Apr17/doc/html/fix_nh.html lammps-13Apr17/doc/html/fix_nh.html
--- lammps-11Apr17/doc/html/fix_nh.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nh_eff.html lammps-13Apr17/doc/html/fix_nh_eff.html
--- lammps-11Apr17/doc/html/fix_nh_eff.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nph_asphere.html lammps-13Apr17/doc/html/fix_nph_asphere.html
--- lammps-11Apr17/doc/html/fix_nph_asphere.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nph_body.html lammps-13Apr17/doc/html/fix_nph_body.html
--- lammps-11Apr17/doc/html/fix_nph_body.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_nph_sphere.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_nphug.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_npt_asphere.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_npt_body.html lammps-13Apr17/doc/html/fix_npt_body.html
--- lammps-11Apr17/doc/html/fix_npt_body.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_npt_sphere.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_nve.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_nve_asphere.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nve_body.html lammps-13Apr17/doc/html/fix_nve_body.html
--- lammps-11Apr17/doc/html/fix_nve_body.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nve_dot.html lammps-13Apr17/doc/html/fix_nve_dot.html
--- lammps-11Apr17/doc/html/fix_nve_dot.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nve_dotc_langevin.html lammps-13Apr17/doc/html/fix_nve_dotc_langevin.html
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--- lammps-11Apr17/doc/html/fix_nve_eff.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nve_limit.html lammps-13Apr17/doc/html/fix_nve_limit.html
--- lammps-11Apr17/doc/html/fix_nve_limit.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nve_line.html lammps-13Apr17/doc/html/fix_nve_line.html
--- lammps-11Apr17/doc/html/fix_nve_line.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nve_manifold_rattle.html lammps-13Apr17/doc/html/fix_nve_manifold_rattle.html
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diff -Naur lammps-11Apr17/doc/html/fix_nve_noforce.html lammps-13Apr17/doc/html/fix_nve_noforce.html
--- lammps-11Apr17/doc/html/fix_nve_noforce.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nve_sphere.html lammps-13Apr17/doc/html/fix_nve_sphere.html
--- lammps-11Apr17/doc/html/fix_nve_sphere.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nve_tri.html lammps-13Apr17/doc/html/fix_nve_tri.html
--- lammps-11Apr17/doc/html/fix_nve_tri.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nvk.html lammps-13Apr17/doc/html/fix_nvk.html
--- lammps-11Apr17/doc/html/fix_nvk.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nvt_asphere.html lammps-13Apr17/doc/html/fix_nvt_asphere.html
--- lammps-11Apr17/doc/html/fix_nvt_asphere.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nvt_body.html lammps-13Apr17/doc/html/fix_nvt_body.html
--- lammps-11Apr17/doc/html/fix_nvt_body.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nvt_manifold_rattle.html lammps-13Apr17/doc/html/fix_nvt_manifold_rattle.html
--- lammps-11Apr17/doc/html/fix_nvt_manifold_rattle.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nvt_sllod.html lammps-13Apr17/doc/html/fix_nvt_sllod.html
--- lammps-11Apr17/doc/html/fix_nvt_sllod.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_nvt_sllod_eff.html lammps-13Apr17/doc/html/fix_nvt_sllod_eff.html
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--- lammps-11Apr17/doc/html/fix_nvt_sphere.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_oneway.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/fix_press_berendsen.html lammps-13Apr17/doc/html/fix_press_berendsen.html
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diff -Naur lammps-11Apr17/doc/html/fix_property_atom.html lammps-13Apr17/doc/html/fix_property_atom.html
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diff -Naur lammps-11Apr17/doc/html/fix_qeq_reax.html lammps-13Apr17/doc/html/fix_qeq_reax.html
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diff -Naur lammps-11Apr17/doc/html/fix_reax_bonds.html lammps-13Apr17/doc/html/fix_reax_bonds.html
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diff -Naur lammps-11Apr17/doc/html/fix_reaxc_species.html lammps-13Apr17/doc/html/fix_reaxc_species.html
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diff -Naur lammps-11Apr17/doc/html/fix_rx.html lammps-13Apr17/doc/html/fix_rx.html
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diff -Naur lammps-11Apr17/doc/html/fix_saed_vtk.html lammps-13Apr17/doc/html/fix_saed_vtk.html
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diff -Naur lammps-11Apr17/doc/html/fix_setforce.html lammps-13Apr17/doc/html/fix_setforce.html
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diff -Naur lammps-11Apr17/doc/html/fix_shake.html lammps-13Apr17/doc/html/fix_shake.html
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diff -Naur lammps-11Apr17/doc/html/fix_shardlow.html lammps-13Apr17/doc/html/fix_shardlow.html
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--- lammps-11Apr17/doc/html/fix_smd_adjust_dt.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_wall.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_wall_gran.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fix_wall_gran_region.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/fixes.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/if.html lammps-13Apr17/doc/html/if.html
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diff -Naur lammps-11Apr17/doc/html/improper_coeff.html lammps-13Apr17/doc/html/improper_coeff.html
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diff -Naur lammps-11Apr17/doc/html/improper_cossq.html lammps-13Apr17/doc/html/improper_cossq.html
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diff -Naur lammps-11Apr17/doc/html/improper_cvff.html lammps-13Apr17/doc/html/improper_cvff.html
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diff -Naur lammps-11Apr17/doc/html/improper_distance.html lammps-13Apr17/doc/html/improper_distance.html
--- lammps-11Apr17/doc/html/improper_distance.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/improper_fourier.html lammps-13Apr17/doc/html/improper_fourier.html
--- lammps-11Apr17/doc/html/improper_fourier.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/improper_harmonic.html lammps-13Apr17/doc/html/improper_harmonic.html
--- lammps-11Apr17/doc/html/improper_harmonic.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/improper_hybrid.html lammps-13Apr17/doc/html/improper_hybrid.html
--- lammps-11Apr17/doc/html/improper_hybrid.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/improper_none.html lammps-13Apr17/doc/html/improper_none.html
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diff -Naur lammps-11Apr17/doc/html/improper_ring.html lammps-13Apr17/doc/html/improper_ring.html
--- lammps-11Apr17/doc/html/improper_ring.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/improper_style.html lammps-13Apr17/doc/html/improper_style.html
--- lammps-11Apr17/doc/html/improper_style.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/improper_umbrella.html lammps-13Apr17/doc/html/improper_umbrella.html
--- lammps-11Apr17/doc/html/improper_umbrella.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/improper_zero.html lammps-13Apr17/doc/html/improper_zero.html
--- lammps-11Apr17/doc/html/improper_zero.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/impropers.html lammps-13Apr17/doc/html/impropers.html
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diff -Naur lammps-11Apr17/doc/html/include.html lammps-13Apr17/doc/html/include.html
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diff -Naur lammps-11Apr17/doc/html/info.html lammps-13Apr17/doc/html/info.html
--- lammps-11Apr17/doc/html/info.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/jump.html lammps-13Apr17/doc/html/jump.html
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diff -Naur lammps-11Apr17/doc/html/kspace_modify.html lammps-13Apr17/doc/html/kspace_modify.html
--- lammps-11Apr17/doc/html/kspace_modify.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/kspace_style.html lammps-13Apr17/doc/html/kspace_style.html
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+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/label.html lammps-13Apr17/doc/html/label.html
--- lammps-11Apr17/doc/html/label.html	2017-04-11 09:01:35.000000000 -0600
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/lattice.html lammps-13Apr17/doc/html/lattice.html
--- lammps-11Apr17/doc/html/lattice.html	2017-04-11 09:01:35.000000000 -0600
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+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/log.html lammps-13Apr17/doc/html/log.html
--- lammps-11Apr17/doc/html/log.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/manifolds.html lammps-13Apr17/doc/html/manifolds.html
--- lammps-11Apr17/doc/html/manifolds.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/mass.html lammps-13Apr17/doc/html/mass.html
--- lammps-11Apr17/doc/html/mass.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/min_modify.html lammps-13Apr17/doc/html/min_modify.html
--- lammps-11Apr17/doc/html/min_modify.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/min_style.html lammps-13Apr17/doc/html/min_style.html
--- lammps-11Apr17/doc/html/min_style.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/minimize.html lammps-13Apr17/doc/html/minimize.html
--- lammps-11Apr17/doc/html/minimize.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/molecule.html lammps-13Apr17/doc/html/molecule.html
--- lammps-11Apr17/doc/html/molecule.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/neb.html lammps-13Apr17/doc/html/neb.html
--- lammps-11Apr17/doc/html/neb.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/neigh_modify.html lammps-13Apr17/doc/html/neigh_modify.html
--- lammps-11Apr17/doc/html/neigh_modify.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/neighbor.html lammps-13Apr17/doc/html/neighbor.html
--- lammps-11Apr17/doc/html/neighbor.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/newton.html lammps-13Apr17/doc/html/newton.html
--- lammps-11Apr17/doc/html/newton.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/next.html lammps-13Apr17/doc/html/next.html
--- lammps-11Apr17/doc/html/next.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/objects.inv lammps-13Apr17/doc/html/objects.inv
--- lammps-11Apr17/doc/html/objects.inv	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/package.html lammps-13Apr17/doc/html/package.html
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diff -Naur lammps-11Apr17/doc/html/pair_adp.html lammps-13Apr17/doc/html/pair_adp.html
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diff -Naur lammps-11Apr17/doc/html/pair_airebo.html lammps-13Apr17/doc/html/pair_airebo.html
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diff -Naur lammps-11Apr17/doc/html/pair_beck.html lammps-13Apr17/doc/html/pair_beck.html
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diff -Naur lammps-11Apr17/doc/html/pair_body.html lammps-13Apr17/doc/html/pair_body.html
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diff -Naur lammps-11Apr17/doc/html/partition.html lammps-13Apr17/doc/html/partition.html
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diff -Naur lammps-11Apr17/doc/html/python.html lammps-13Apr17/doc/html/python.html
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diff -Naur lammps-11Apr17/doc/html/region.html lammps-13Apr17/doc/html/region.html
--- lammps-11Apr17/doc/html/region.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/replicate.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/rerun.html lammps-13Apr17/doc/html/rerun.html
--- lammps-11Apr17/doc/html/rerun.html	2017-04-11 09:01:35.000000000 -0600
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--- lammps-11Apr17/doc/html/reset_timestep.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/restart.html lammps-13Apr17/doc/html/restart.html
--- lammps-11Apr17/doc/html/restart.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/run.html lammps-13Apr17/doc/html/run.html
--- lammps-11Apr17/doc/html/run.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/run_style.html lammps-13Apr17/doc/html/run_style.html
--- lammps-11Apr17/doc/html/run_style.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/search.html lammps-13Apr17/doc/html/search.html
--- lammps-11Apr17/doc/html/search.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/set.html lammps-13Apr17/doc/html/set.html
--- lammps-11Apr17/doc/html/set.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/shell.html lammps-13Apr17/doc/html/shell.html
--- lammps-11Apr17/doc/html/shell.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/special_bonds.html lammps-13Apr17/doc/html/special_bonds.html
--- lammps-11Apr17/doc/html/special_bonds.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/suffix.html lammps-13Apr17/doc/html/suffix.html
--- lammps-11Apr17/doc/html/suffix.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/tad.html lammps-13Apr17/doc/html/tad.html
--- lammps-11Apr17/doc/html/tad.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/temper.html lammps-13Apr17/doc/html/temper.html
--- lammps-11Apr17/doc/html/temper.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/temper_grem.html lammps-13Apr17/doc/html/temper_grem.html
--- lammps-11Apr17/doc/html/temper_grem.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/thermo.html lammps-13Apr17/doc/html/thermo.html
--- lammps-11Apr17/doc/html/thermo.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/thermo_modify.html lammps-13Apr17/doc/html/thermo_modify.html
--- lammps-11Apr17/doc/html/thermo_modify.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/thermo_style.html lammps-13Apr17/doc/html/thermo_style.html
--- lammps-11Apr17/doc/html/thermo_style.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/timer.html lammps-13Apr17/doc/html/timer.html
--- lammps-11Apr17/doc/html/timer.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/timestep.html lammps-13Apr17/doc/html/timestep.html
--- lammps-11Apr17/doc/html/timestep.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/tutorial_drude.html lammps-13Apr17/doc/html/tutorial_drude.html
--- lammps-11Apr17/doc/html/tutorial_drude.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/tutorial_github.html lammps-13Apr17/doc/html/tutorial_github.html
--- lammps-11Apr17/doc/html/tutorial_github.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/tutorial_pylammps.html lammps-13Apr17/doc/html/tutorial_pylammps.html
--- lammps-11Apr17/doc/html/tutorial_pylammps.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/tutorials.html lammps-13Apr17/doc/html/tutorials.html
--- lammps-11Apr17/doc/html/tutorials.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/uncompute.html lammps-13Apr17/doc/html/uncompute.html
--- lammps-11Apr17/doc/html/uncompute.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/undump.html lammps-13Apr17/doc/html/undump.html
--- lammps-11Apr17/doc/html/undump.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/unfix.html lammps-13Apr17/doc/html/unfix.html
--- lammps-11Apr17/doc/html/unfix.html	2017-04-11 09:01:35.000000000 -0600
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diff -Naur lammps-11Apr17/doc/html/units.html lammps-13Apr17/doc/html/units.html
--- lammps-11Apr17/doc/html/units.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/units.html	2017-04-13 11:35:03.831114400 -0600
@@ -242,7 +242,7 @@
       <div class="wy-nav-content">
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
   <ul class="wy-breadcrumbs">
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diff -Naur lammps-11Apr17/doc/html/variable.html lammps-13Apr17/doc/html/variable.html
--- lammps-11Apr17/doc/html/variable.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/variable.html	2017-04-13 11:35:03.773112672 -0600
@@ -254,7 +254,7 @@
       <div class="wy-nav-content">
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/velocity.html lammps-13Apr17/doc/html/velocity.html
--- lammps-11Apr17/doc/html/velocity.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/velocity.html	2017-04-13 11:35:03.785113030 -0600
@@ -243,7 +243,7 @@
       <div class="wy-nav-content">
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
   <ul class="wy-breadcrumbs">
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diff -Naur lammps-11Apr17/doc/html/write_coeff.html lammps-13Apr17/doc/html/write_coeff.html
--- lammps-11Apr17/doc/html/write_coeff.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/write_coeff.html	2017-04-13 11:35:03.786113059 -0600
@@ -242,7 +242,7 @@
       <div class="wy-nav-content">
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           <div role="navigation" aria-label="breadcrumbs navigation">
-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/write_data.html lammps-13Apr17/doc/html/write_data.html
--- lammps-11Apr17/doc/html/write_data.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/write_data.html	2017-04-13 11:35:03.773112672 -0600
@@ -243,7 +243,7 @@
       <div class="wy-nav-content">
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/write_dump.html lammps-13Apr17/doc/html/write_dump.html
--- lammps-11Apr17/doc/html/write_dump.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/write_dump.html	2017-04-13 11:35:03.774112702 -0600
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       <div class="wy-nav-content">
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/html/write_restart.html lammps-13Apr17/doc/html/write_restart.html
--- lammps-11Apr17/doc/html/write_restart.html	2017-04-11 09:01:35.000000000 -0600
+++ lammps-13Apr17/doc/html/write_restart.html	2017-04-13 11:35:03.780112878 -0600
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-  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 11 Apr 2017</div>
+  <div style="text-align: center; margin-bottom: -1.5em; display: block"><b>LAMMPS</b> 13 Apr 2017</div>
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diff -Naur lammps-11Apr17/doc/src/Manual.txt lammps-13Apr17/doc/src/Manual.txt
--- lammps-11Apr17/doc/src/Manual.txt	2017-04-11 08:59:36.000000000 -0600
+++ lammps-13Apr17/doc/src/Manual.txt	2017-04-13 10:50:28.752664000 -0600
@@ -1,7 +1,7 @@
 <!-- HTML_ONLY -->
 <HEAD>
 <TITLE>LAMMPS Users Manual</TITLE>
-<META NAME="docnumber" CONTENT="11 Apr 2017 version">
+<META NAME="docnumber" CONTENT="13 Apr 2017 version">
 <META NAME="author" CONTENT="http://lammps.sandia.gov - Sandia National Laboratories">
 <META NAME="copyright" CONTENT="Copyright (2003) Sandia Corporation.  This software and manual is distributed under the GNU General Public License.">
 </HEAD>
@@ -21,7 +21,7 @@
 <H1></H1>
 
 LAMMPS Documentation :c,h3
-11 Apr 2017 version :c,h4
+13 Apr 2017 version :c,h4
 
 Version info: :h4
 
diff -Naur lammps-11Apr17/examples/cmap/log.11Apr17.cmap.g++.1 lammps-13Apr17/examples/cmap/log.11Apr17.cmap.g++.1
--- lammps-11Apr17/examples/cmap/log.11Apr17.cmap.g++.1	1969-12-31 17:00:00.000000000 -0700
+++ lammps-13Apr17/examples/cmap/log.11Apr17.cmap.g++.1	2017-04-11 09:50:51.501470000 -0600
@@ -0,0 +1,205 @@
+LAMMPS (31 Mar 2017)
+# Created by charmm2lammps v1.8.2.6 beta on Thu Mar  3 20:56:57 EST 2016
+
+units           real
+neigh_modify    delay 2 every 1
+#newton          off
+
+boundary        p p p
+
+atom_style      full
+bond_style      harmonic
+angle_style     charmm
+dihedral_style  charmmfsw
+improper_style  harmonic
+
+pair_style      lj/charmmfsw/coul/charmmfsh 8 12
+pair_modify     mix arithmetic
+
+fix             cmap all cmap charmm22.cmap
+Reading potential file charmm22.cmap with DATE: 2016-09-26
+fix_modify      cmap energy yes
+
+read_data       gagg.data fix cmap crossterm CMAP
+  orthogonal box = (-34.4147 -36.1348 -39.3491) to (45.5853 43.8652 40.6509)
+  1 by 1 by 1 MPI processor grid
+  reading atoms ...
+  34 atoms
+  scanning bonds ...
+  4 = max bonds/atom
+  scanning angles ...
+  6 = max angles/atom
+  scanning dihedrals ...
+  12 = max dihedrals/atom
+  scanning impropers ...
+  1 = max impropers/atom
+  reading bonds ...
+  33 bonds
+  reading angles ...
+  57 angles
+  reading dihedrals ...
+  75 dihedrals
+  reading impropers ...
+  7 impropers
+  4 = max # of 1-2 neighbors
+  7 = max # of 1-3 neighbors
+  13 = max # of 1-4 neighbors
+  16 = max # of special neighbors
+
+special_bonds   charmm
+fix             1 all nve
+
+#fix             1 all nvt temp 300 300 100.0
+#fix             2 all shake 1e-9 500 0 m 1.0
+
+velocity        all create 0.0 12345678 dist uniform
+
+thermo          1000
+thermo_style    custom step ecoul evdwl ebond eangle edihed f_cmap eimp
+timestep        2.0
+
+run             100000
+Neighbor list info ...
+  update every 1 steps, delay 2 steps, check yes
+  max neighbors/atom: 2000, page size: 100000
+  master list distance cutoff = 14
+  ghost atom cutoff = 14
+  binsize = 7, bins = 12 12 12
+  1 neighbor lists, perpetual/occasional/extra = 1 0 0
+  (1) pair lj/charmmfsw/coul/charmmfsh, perpetual
+      attributes: half, newton on
+      pair build: half/bin/newton
+      stencil: half/bin/3d/newton
+      bin: standard
+Per MPI rank memory allocation (min/avg/max) = 14.96 | 14.96 | 14.96 Mbytes
+Step E_coul E_vdwl E_bond E_angle E_dihed f_cmap E_impro 
+       0    16.287573  -0.85933785    1.2470497    4.8441789    4.5432816    -1.473352   0.10453023 
+    1000    18.816462  -0.84379243   0.78931817    2.7554247    4.4371421   -2.7762038   0.12697656 
+    2000    18.091571    -1.045888   0.72306589    3.0951524    4.6725102   -2.3580092   0.22712496 
+    3000    17.835596   -1.2171641   0.72666403    2.6696491    5.4373798   -2.0737041  0.075101693 
+    4000    16.211232  -0.42713611   0.99472642    3.8961462    5.2009895   -2.5626866   0.17356243 
+    5000     17.72183  -0.57081189   0.90733068    3.4376382    4.5457582   -2.3727543   0.12354518 
+    6000    18.753977   -1.5772499   0.81468321    2.9236782    4.6033216   -2.3380859   0.12835782 
+    7000    18.186024  -0.84205608   0.58996182    3.0329585    4.7221473   -2.5733243   0.10047631 
+    8000    18.214306   -1.1360938   0.72597611    3.7493028    4.7319958   -2.8957969    0.2006046 
+    9000    17.248408  -0.48641993   0.90266229    2.9721743    4.7651056   -2.1473354    0.1302043 
+   10000    17.760655   -1.2968444   0.92384663    3.7007455    4.7378947   -2.2147779   0.06940579 
+   11000    17.633929  -0.57368413   0.84872849    3.4277114     4.285393    -2.236944   0.17204973 
+   12000    18.305835   -1.0675148   0.75879532    2.8853173     4.685027    -2.409087  0.087538866 
+   13000    17.391558   -0.9975291   0.66671947    3.8065638    5.2285578   -2.4198822   0.06253594 
+   14000    17.483387  -0.67727643   0.91966477    3.7317031    4.7770445   -2.6080027   0.11487095 
+   15000    18.131749   -1.1918751    1.0025684    3.1238131     4.789742   -2.2546745   0.13782813 
+   16000    16.972343  -0.43926531   0.60644597    3.7551592    4.8658618   -2.2627659   0.12353145 
+   17000    18.080785   -1.2073565    0.7867072    3.5671106      4.43754   -2.5092904   0.17429146 
+   18000    17.474576  -0.97836065    0.8678524    3.7961537    4.3409032   -1.8922572     0.134048 
+   19000    17.000911   -1.2286864   0.83615834    3.9322908    4.9319492   -2.3281576  0.056689619 
+   20000    17.043286   -0.8506561   0.80966589    3.5087339    4.8603878   -2.3365263  0.096794824 
+   21000    17.314495   -1.1430889   0.95363892    4.2446032    4.2756745   -2.1829483   0.17119518 
+   22000    18.954881    -0.998673   0.58688334      2.71536    4.6634319   -2.6862804   0.20328442 
+   23000    17.160427  -0.97803282   0.86894041    4.0897736    4.3146238   -2.1962289  0.075339092 
+   24000    17.602026   -1.0833323   0.94888776    3.7341878    4.3084335   -2.1640414  0.081493681 
+   25000    17.845584   -1.3432612   0.93497086    3.8911043     4.468032   -2.3475883  0.093204333 
+   26000    17.833261   -1.1020534   0.77931087    3.7628141     4.512381   -2.3134761   0.15568465 
+   27000     17.68607   -1.3222026    1.1985872    3.5817624    4.6360755   -2.3492774   0.08427906 
+   28000    18.326649   -1.2669291   0.74809075    3.2624429    4.4698564   -2.3679076   0.14677293 
+   29000    17.720933   -1.0773886   0.83099482    3.7652834    4.6584594   -2.8255303   0.23092596 
+   30000    18.201999   -1.0168706    1.0637455     3.453095    4.3738593   -2.8063214   0.18658217 
+   31000    17.823502   -1.2685768   0.84805585    3.8600661    4.2195821   -2.1169716   0.12517101 
+   32000    16.883133  -0.62062648   0.84434922    3.5042683    5.1264906   -2.2674699  0.030138165 
+   33000    17.805715    -1.679553    1.2430372     4.314677    4.2523894   -2.3008321   0.18591872 
+   34000    16.723767  -0.54189072    1.1282827    3.8542159    4.3026559   -2.2186336   0.05392425 
+   35000    17.976909  -0.72092075    0.5876319    2.9726396    5.0881439    -2.491692   0.17356291 
+   36000    18.782492    -1.514246   0.63237955    3.2777164    4.6077164    -2.502574  0.082537318 
+   37000    17.247716   -0.6344626   0.79885976     3.452491    4.7618281   -2.3902444   0.11450271 
+   38000    17.996494   -1.6712877    1.0111769    4.1689136      4.46963   -2.4076725   0.11875756 
+   39000    17.586857  -0.74508086   0.95970486    3.7395038    4.6011357   -2.9854953   0.30143284 
+   40000    17.494879  -0.30772446   0.72047991    3.2604877    4.7283734   -2.3812495   0.16399034 
+   41000    15.855772  -0.49642605   0.82496448    4.5139653      4.76884    -2.214141   0.10899661 
+   42000    17.898568   -1.3078863    1.1505144    4.0429873    4.3889581   -2.8696559   0.23336417 
+   43000    19.014372   -1.6325979    1.1553166    3.5660772    4.4047997   -2.9302044   0.13672127 
+   44000    18.250782  -0.97211613   0.72714301    3.2258362    4.7257298   -2.5533613   0.11968073 
+   45000    17.335174   0.24746331    1.0415866    3.3220992    4.5251095   -3.0415216   0.24453084 
+   46000     17.72846   -0.9541418   0.88153841    3.7893452    4.5251883   -2.4003613  0.051809816 
+   47000    18.226762  -0.67057787   0.84352989    3.0609522    4.5449078   -2.4694254  0.073703949 
+   48000    17.838074  -0.88768441    1.3812262    3.5890492    4.5827868   -3.0137515   0.21417113 
+   49000    17.973733  -0.75118705   0.69667886    3.3989025    4.7058886   -2.8243945   0.26665792 
+   50000    17.461583  -0.65040016   0.68943524    2.9374743    5.6971777   -2.4438011    0.1697603 
+   51000     16.79766 -0.010684434   0.89795555     3.959039      4.56763   -2.5101098   0.15048853 
+   52000    17.566543   -0.7262764   0.74354418    3.3423185    4.8426523   -2.4187649   0.16908776 
+   53000    17.964274   -0.9270914     1.065952    3.0397181    4.4682262   -2.2179503   0.07873406 
+   54000    17.941256   -0.5807578   0.76516121    3.7262371    4.6975126    -3.179899   0.24433708 
+   55000    17.079478  -0.48559832   0.95364453    3.0414645    5.2811414   -2.7064882   0.30102814 
+   56000    17.632179  -0.75403299   0.97577942    3.3672363    4.4851336   -2.3683659  0.051117638 
+   57000     16.17128  -0.44699325   0.76341543     4.267716    5.0881056   -2.4122329   0.16671692 
+   58000    16.899276  -0.76481024    1.0400825     3.973493    4.8823309   -2.4270284  0.048716383 
+   59000    18.145412  -0.84968335   0.71698306    3.2024358    4.6115739   -2.2520353   0.19466966 
+   60000    17.578258   -1.0067331   0.72822527    3.5375208    4.9110255   -2.2319607   0.11922362 
+   61000    17.434762   -1.0244393   0.90593099    3.8446915    4.8571191   -2.6228357   0.23259208 
+   62000    17.580489   -1.1135917   0.79577432    3.7043524    4.6058114    -2.351492  0.042904152 
+   63000    18.207335   -1.1512268   0.82684507    3.4114738     4.351069   -2.1878441  0.082922105 
+   64000    18.333083   -1.1182287   0.74058959    3.6905164    4.3226172   -2.7110393   0.14721704 
+   65000    16.271579   -0.7122151    1.0200168    4.6983643    4.3681131    -2.194921   0.12831024 
+   66000    17.316444   -0.5729385   0.85254108    3.5769963    4.5526705   -2.3321328  0.040452643 
+   67000     17.19011   -0.8814312    1.1381258    3.8605789    4.4183813    -2.299607  0.091527355 
+   68000    18.223367    -1.362189   0.74472056     3.259165     4.486512   -2.2181134  0.048952796 
+   69000    17.646348  -0.91647162   0.73990335    3.9313692    5.2663097   -3.3816778   0.27769877 
+   70000    18.173493   -1.3107718   0.96484426     3.219728    4.5045124   -2.3349534  0.082327407 
+   71000      17.0627  -0.58509083   0.85964129    3.8490884     4.437895   -2.1673348   0.24151404 
+   72000    17.809764  -0.35128902   0.65479258    3.3945008    4.6160508   -2.5486166   0.10829531 
+   73000     18.27769   -1.0739758   0.80890957    3.6070901    4.6256762   -2.4576547  0.080025736 
+   74000    18.109437   -1.0691837   0.66679323    3.5923203    4.4825716   -2.5048169   0.21372319 
+   75000    17.914569   -1.3500765    1.2993494     3.362421    4.4160377   -2.1278163   0.19397641 
+   76000    16.563928  -0.16539261    1.0067302    3.5742755    4.8581915   -2.1362429  0.059822408 
+   77000    18.130477  -0.38361279   0.43406954    3.4725995    4.7005855   -2.8836242   0.11958174 
+   78000    16.746204   -1.1732959    0.7455507    3.6296638    5.6344113    -2.459208   0.16099803 
+   79000    18.243999   -1.5850155    1.0108545    3.4727867    4.3367411    -2.316686  0.070480814 
+   80000    16.960715  -0.84100929   0.91604996     3.862215     4.780949   -2.3711596  0.073916605 
+   81000    17.697722   -1.1126605     0.952804    3.7114455    4.4216316   -2.2770085  0.091372066 
+   82000    17.835901   -1.3091474   0.71867629    3.8168122    5.0150205   -2.4730634  0.062592852 
+   83000    19.168418    -1.476938   0.75592316    3.2304519    4.3946471   -2.2991395   0.13083324 
+   84000    17.945778   -1.5223622    1.0859941    3.4334011    5.0286682   -2.7550892    0.2476269 
+   85000    17.950251  -0.85843846   0.86888218    3.3101287    4.5511879   -2.3640013   0.12080834 
+   86000    17.480699  -0.97493649   0.85049761    3.4973085    4.6344922    -2.343121    0.2009677 
+   87000    17.980244    -1.114983   0.88796989    3.4113329    4.3535853   -2.2535412   0.14494917 
+   88000    18.023866    -1.226683   0.62339706    3.7649269    4.5923973   -2.3923523   0.10464375 
+   89000    16.362829    -0.311462    1.0265375    4.0101723    4.4184777   -2.0314129  0.056570704 
+   90000    17.533149  -0.41526788    1.0362029    3.4247412    4.2734431   -2.4776658   0.16960663 
+   91000    17.719099   -1.1956801    1.0069945    3.2380672    4.8982805   -2.2154906   0.12950936 
+   92000    17.762654    -1.170027   0.95814525    3.5217717    4.5405343   -2.5983677   0.15037754 
+   93000    17.393958  -0.45641026    0.6579069    3.6002204    4.5942053   -2.5559641   0.12026544 
+   94000      16.8182  -0.92962066   0.86801362    4.2914398     4.659848   -2.5251987   0.18000415 
+   95000    17.642086   -0.7994896    0.7003756    3.8036697    4.5252487   -2.4166307   0.15686517 
+   96000    18.114292   -1.5102104    1.2635908    3.2764427    5.0659496   -2.2777806  0.054309645 
+   97000    18.575765   -1.6015311   0.69500699    3.1649317    4.9945742   -2.4012125  0.067373724 
+   98000    16.578893  -0.78030229   0.91524222    4.4429655    4.4622392   -2.4052655   0.15355705 
+   99000     17.26063  -0.57832833    0.7098846    3.9000046    4.5576484   -2.5333026   0.25517222 
+  100000    18.377235  -0.89109577   0.68988617    2.8751751    4.4115591   -2.3560731   0.12185212 
+Loop time of 2.96043 on 1 procs for 100000 steps with 34 atoms
+
+Performance: 5836.990 ns/day, 0.004 hours/ns, 33778.875 timesteps/s
+99.9% CPU use with 1 MPI tasks x no OpenMP threads
+
+MPI task timing breakdown:
+Section |  min time  |  avg time  |  max time  |%varavg| %total
+---------------------------------------------------------------
+Pair    | 1.074      | 1.074      | 1.074      |   0.0 | 36.28
+Bond    | 1.6497     | 1.6497     | 1.6497     |   0.0 | 55.72
+Neigh   | 0.007576   | 0.007576   | 0.007576   |   0.0 |  0.26
+Comm    | 0.012847   | 0.012847   | 0.012847   |   0.0 |  0.43
+Output  | 0.0010746  | 0.0010746  | 0.0010746  |   0.0 |  0.04
+Modify  | 0.16485    | 0.16485    | 0.16485    |   0.0 |  5.57
+Other   |            | 0.05037    |            |       |  1.70
+
+Nlocal:    34 ave 34 max 34 min
+Histogram: 1 0 0 0 0 0 0 0 0 0
+Nghost:    0 ave 0 max 0 min
+Histogram: 1 0 0 0 0 0 0 0 0 0
+Neighs:    395 ave 395 max 395 min
+Histogram: 1 0 0 0 0 0 0 0 0 0
+
+Total # of neighbors = 395
+Ave neighs/atom = 11.6176
+Ave special neighs/atom = 9.52941
+Neighbor list builds = 253
+Dangerous builds = 0
+Total wall time: 0:00:02
diff -Naur lammps-11Apr17/examples/cmap/log.11Apr17.cmap.g++.4 lammps-13Apr17/examples/cmap/log.11Apr17.cmap.g++.4
--- lammps-11Apr17/examples/cmap/log.11Apr17.cmap.g++.4	1969-12-31 17:00:00.000000000 -0700
+++ lammps-13Apr17/examples/cmap/log.11Apr17.cmap.g++.4	2017-04-11 09:50:51.501470000 -0600
@@ -0,0 +1,205 @@
+LAMMPS (31 Mar 2017)
+# Created by charmm2lammps v1.8.2.6 beta on Thu Mar  3 20:56:57 EST 2016
+
+units           real
+neigh_modify    delay 2 every 1
+#newton          off
+
+boundary        p p p
+
+atom_style      full
+bond_style      harmonic
+angle_style     charmm
+dihedral_style  charmmfsw
+improper_style  harmonic
+
+pair_style      lj/charmmfsw/coul/charmmfsh 8 12
+pair_modify     mix arithmetic
+
+fix             cmap all cmap charmm22.cmap
+Reading potential file charmm22.cmap with DATE: 2016-09-26
+fix_modify      cmap energy yes
+
+read_data       gagg.data fix cmap crossterm CMAP
+  orthogonal box = (-34.4147 -36.1348 -39.3491) to (45.5853 43.8652 40.6509)
+  1 by 2 by 2 MPI processor grid
+  reading atoms ...
+  34 atoms
+  scanning bonds ...
+  4 = max bonds/atom
+  scanning angles ...
+  6 = max angles/atom
+  scanning dihedrals ...
+  12 = max dihedrals/atom
+  scanning impropers ...
+  1 = max impropers/atom
+  reading bonds ...
+  33 bonds
+  reading angles ...
+  57 angles
+  reading dihedrals ...
+  75 dihedrals
+  reading impropers ...
+  7 impropers
+  4 = max # of 1-2 neighbors
+  7 = max # of 1-3 neighbors
+  13 = max # of 1-4 neighbors
+  16 = max # of special neighbors
+
+special_bonds   charmm
+fix             1 all nve
+
+#fix             1 all nvt temp 300 300 100.0
+#fix             2 all shake 1e-9 500 0 m 1.0
+
+velocity        all create 0.0 12345678 dist uniform
+
+thermo          1000
+thermo_style    custom step ecoul evdwl ebond eangle edihed f_cmap eimp
+timestep        2.0
+
+run             100000
+Neighbor list info ...
+  update every 1 steps, delay 2 steps, check yes
+  max neighbors/atom: 2000, page size: 100000
+  master list distance cutoff = 14
+  ghost atom cutoff = 14
+  binsize = 7, bins = 12 12 12
+  1 neighbor lists, perpetual/occasional/extra = 1 0 0
+  (1) pair lj/charmmfsw/coul/charmmfsh, perpetual
+      attributes: half, newton on
+      pair build: half/bin/newton
+      stencil: half/bin/3d/newton
+      bin: standard
+Per MPI rank memory allocation (min/avg/max) = 14.94 | 15.57 | 16.2 Mbytes
+Step E_coul E_vdwl E_bond E_angle E_dihed f_cmap E_impro 
+       0    16.287573  -0.85933785    1.2470497    4.8441789    4.5432816    -1.473352   0.10453023 
+    1000    18.816462  -0.84379243   0.78931817    2.7554247    4.4371421   -2.7762038   0.12697656 
+    2000    18.091571    -1.045888   0.72306589    3.0951524    4.6725102   -2.3580092   0.22712496 
+    3000    17.835596   -1.2171641   0.72666403    2.6696491    5.4373798   -2.0737041  0.075101693 
+    4000    16.211232  -0.42713611   0.99472642    3.8961462    5.2009895   -2.5626866   0.17356243 
+    5000     17.72183  -0.57081189   0.90733068    3.4376382    4.5457582   -2.3727543   0.12354518 
+    6000    18.753977   -1.5772499   0.81468321    2.9236782    4.6033216   -2.3380859   0.12835782 
+    7000    18.186024  -0.84205609   0.58996181    3.0329584    4.7221473   -2.5733244   0.10047631 
+    8000    18.214306   -1.1360934   0.72597583    3.7493032    4.7319959   -2.8957975   0.20060467 
+    9000    17.248415  -0.48642024   0.90266262    2.9721744    4.7651003   -2.1473349   0.13020438 
+   10000    17.760663   -1.2968458   0.92384687    3.7007432    4.7378917   -2.2147799   0.06940514 
+   11000     17.63395  -0.57366075   0.84871737    3.4276851    4.2853865   -2.2369491   0.17205075 
+   12000    18.305713   -1.0672299   0.75876262    2.8852171    4.6850229   -2.4090072  0.087568888 
+   13000    17.383367  -0.99678627   0.66712651    3.8060954     5.233865   -2.4180629  0.062014239 
+   14000    17.510901  -0.68723297   0.92448551    3.7550867    4.7321218   -2.6059088   0.11504409 
+   15000    18.080165     -1.13316   0.99982253      3.09947    4.8171402   -2.2713372   0.14580371 
+   16000    17.383245   -0.4535296   0.57826268    3.6453593    4.6541138   -2.2434512   0.13285609 
+   17000    17.111153   -0.3414839   0.73667584    3.7485311    4.6262965   -2.6166049   0.12635815 
+   18000    16.862046   -1.3592061    1.2371142    4.4878937    4.2937117   -2.2112584  0.066145125 
+   19000    18.313891    -1.654238   0.90644101    3.3934089     4.550735   -2.1862171  0.081267736 
+   20000    19.083561   -1.3081747   0.56257812    2.7633848    4.6211438   -2.5196707   0.13763071 
+   21000     18.23741    -1.051353   0.64408722    3.1735565    4.6912533   -2.2491947  0.099394904 
+   22000    17.914515  -0.89769621   0.61793801    3.1224992    4.8683543    -2.282475   0.14524537 
+   23000    16.756122  -0.98277883    1.2554905    3.7916115    4.7301443   -2.3094994   0.10226772 
+   24000    16.109857  -0.54593177   0.86934462    4.4293574     4.926985   -2.2652264   0.11414331 
+   25000    18.590559    -1.497327    1.1898361    2.9134403    4.7854107   -2.4437918  0.067416154 
+   26000    18.493391   -1.0533797    0.4889578    3.6563013    4.6171721   -2.3240835   0.11607829 
+   27000    18.646522   -1.1229601   0.67956815    2.7937638    4.8991207   -2.4068997   0.10109147 
+   28000    18.545103   -1.7237438   0.72488022    3.8041665    4.6459974   -2.4339333   0.21943258 
+   29000    17.840505   -1.0909667   0.88133248    3.3698456    5.0311644   -2.5116617   0.08102693 
+   30000    17.649527  -0.65409177   0.86781692      3.24112    4.9903073   -2.6234925   0.14799777 
+   31000    18.156812  -0.77476556   0.83192789    2.9620784    4.9160635   -2.8571635   0.22283201 
+   32000    18.251583   -1.3384075    0.8059007    3.2588176    4.4365328   -2.1875071  0.087883637 
+   33000    17.702785  -0.88311587   0.98573641    3.4645713    4.2650091   -2.0909158   0.14233004 
+   34000    17.123413   -1.4873429    1.0419563    4.2628178    4.6318762   -2.2292095     0.105354 
+   35000    18.162061   -1.0136007   0.82436129    3.6365024    4.5801677   -2.6856989   0.28648222 
+   36000     17.65618    -1.094718    0.8872444    3.5075241    4.6382423   -2.3895134   0.18116961 
+   37000    17.336475   -1.0657995   0.98869254    3.9252927    4.4383632   -2.2048244   0.22285949 
+   38000    17.369467  -0.97623132    0.6712095    4.1349304     4.597754   -2.4088341   0.14608514 
+   39000    18.170206   -1.2344285   0.77546195    3.6451049    4.7482287   -2.9895286   0.25768859 
+   40000    16.210866  -0.81407781   0.99246271    4.2676233    5.0253763   -2.2929865   0.13348624 
+   41000    17.641798   -1.0868157   0.80119513    3.4302526     5.280872   -2.4025406   0.22747391 
+   42000    18.349848    -1.613759    1.1497004    3.7800682    4.3237683   -2.8676401    0.2120425 
+   43000    19.130245    -1.196778   0.71845659    2.9325758    4.3684415    -2.433424   0.12240982 
+   44000    18.061321   -1.2410101    1.0329373    3.0751569    4.7138313   -2.2880904  0.075814461 
+   45000    18.162713   -1.4414622     1.009159    4.2298758     4.589593   -2.8502298   0.21606844 
+   46000    18.591574  -0.99730412    1.0955215    3.3965004     4.359466   -3.1049731   0.17322629 
+   47000    18.380259   -1.2717381   0.72291269    3.3958016    4.6099628   -2.4605065   0.19825185 
+   48000    18.130478   -1.5051279    1.2087492    3.2488529    4.6690881   -2.2518174   0.05633061 
+   49000    16.419912  -0.89320635   0.98926144    4.0388252    4.9919488   -2.1699511   0.15646479 
+   50000    16.453196   -1.0433497     0.778346    4.6078069    4.7320614   -2.3760788   0.17161976 
+   51000    18.245221  -0.89550444    0.9310446    3.0758194    4.3944595   -2.3082379   0.19983428 
+   52000    17.839632   -1.0221781   0.76425017    3.3331547    4.5368437   -2.0988773   0.21098435 
+   53000    18.693035   -1.4231915   0.76333082    3.1612761     4.583242   -2.4485762  0.089191206 
+   54000    16.334672  -0.36309884    1.0200365    4.6700448    4.1628702   -2.1713841   0.11431995 
+   55000     17.33842  -0.61522682   0.89847366    3.4970659     4.673495   -2.4743036  0.068004878 
+   56000    17.790294   -1.0150845   0.73697112    3.6000297    4.5988343   -2.4822509   0.11434632 
+   57000    18.913486   -1.0985507    1.0231848    2.7483267    4.4421755    -2.574424    0.1763388 
+   58000    17.586896  -0.98284126   0.96965633    3.3330357    4.5325543   -2.1936869  0.083230915 
+   59000     17.77788   -1.1649953   0.83092298    3.8004148    4.3940176   -2.3136642  0.017207608 
+   60000    17.013042  -0.21728023    1.1688832    3.5374476    4.5462244   -2.4425301   0.15028297 
+   61000    17.236242   -1.1342147    1.0301086     3.685948    4.6842331    -2.328108  0.070210812 
+   62000    17.529852   -1.2961547    1.0323133    3.4474598    5.1435839   -2.4553423  0.060842687 
+   63000    18.754704   -1.1816999   0.51806039     3.140172    4.5832701   -2.2713213   0.06327871 
+   64000     17.54594   -1.3592836    0.9694558    4.1363258    4.3547729   -2.3818433   0.12634448 
+   65000    16.962312  -0.54192775   0.90321315    4.0788618    4.2008255   -2.1376711  0.039504515 
+   66000    18.078619   -1.3552947    1.0716861    3.3285374    4.7229362   -2.3331115   0.21978698 
+   67000    17.132732   -1.4376876   0.91486534    4.4461852    4.6894176   -2.3655045  0.068150385 
+   68000     18.69286   -1.2856207    0.3895394    3.0620063    4.9922992   -2.3459189  0.079879643 
+   69000    18.329552   -1.1545957   0.88632275    3.1741058    4.4562418   -2.7094867   0.25329613 
+   70000    16.681168  -0.94434373    1.2450393    4.5737944    4.4902996   -2.4581775   0.15313095 
+   71000    17.375032   -1.0514442    1.0741595    3.4896146    4.8407713   -2.5302576   0.13640847 
+   72000    17.833013   -0.9047134   0.87067876    3.1658924    4.8825932   -2.4398117    0.2343991 
+   73000    17.421411   -1.2190741   0.73706811       4.2895    4.6464636   -2.3872727   0.19696525 
+   74000    17.383158  -0.34208984   0.71333984    3.2718891    4.2718495   -2.2484281   0.10827022 
+   75000     17.20885   -1.2710479     1.125102    3.8414467    5.3222741    -2.375505   0.12910797 
+   76000    16.811578    -0.545162   0.59076961    3.9118604    4.8031296   -2.2777895  0.063015508 
+   77000    16.679231 -0.080955983    0.7253398    3.4203454    5.0987608    -2.379614   0.12961874 
+   78000    18.164524   -1.3115525   0.92526408    3.5764487    4.3814882   -2.3712488  0.073436724 
+   79000    17.738686   -1.0697859    1.2186866    3.0593848    4.6551053   -2.2505871  0.075340661 
+   80000    16.767483  -0.84777477      1.03128    4.1982958    4.6992227   -2.4146425  0.079774219 
+   81000    16.257265   0.62803774   0.84032194    3.3873471    5.0961071   -2.7219776   0.20467848 
+   82000    18.232082   -1.2129302   0.50746051    3.9207128    4.5073437    -2.599371  0.094522372 
+   83000    16.618985  -0.60917055    0.8825847     3.805497    4.9560959   -2.2194726   0.14852687 
+   84000     17.90762  -0.82336075   0.90504161    3.0324198    4.7444271   -2.5036073   0.15860682 
+   85000    16.699883  -0.50297228   0.83405307    3.8598996    4.7971968   -2.2427788   0.10338668 
+   86000    16.353038 -0.0096880616   0.80705167    4.0865115    4.5364338   -2.4548873  0.098456203 
+   87000    17.887331  -0.75281219    1.0030148    4.0117123    4.3443074   -2.9774392   0.16190152 
+   88000    18.583708   -1.4867053   0.86324814    3.3971237    4.3526221    -2.221239   0.14459352 
+   89000    17.684828    -1.283764    1.0021118    3.5426808    4.9057005   -2.3921967   0.05844702 
+   90000      17.2597  -0.84306489   0.99797936    3.8896866    4.4315457   -2.5662899   0.18270206 
+   91000    16.705581  -0.44704047   0.75239556     3.470805     4.976868   -2.1894571   0.12312848 
+   92000    17.548071   -1.2222664   0.92898812    4.0813773    4.3432647   -2.1631158   0.14071343 
+   93000    17.163675  -0.94994776   0.96876981    3.9137692    4.4388666   -2.1260232   0.13187968 
+   94000    18.842071   -1.2822113   0.58767049    3.1393475    4.5820965   -2.7264682   0.10406266 
+   95000    18.112287   -1.1011381   0.63546648    3.4672667     4.486275   -2.2991936  0.041589685 
+   96000    17.102713   -0.6877313    0.8389032    3.6892719    4.5676004   -2.1905327   0.13507011 
+   97000    16.778253   -1.2902153    1.1588744    4.2820083    4.9537657   -2.4798159   0.35696636 
+   98000     18.34638   -1.2908146     1.185356    3.0739807    4.4575453   -2.3959144   0.22407922 
+   99000    17.995148   -1.3939639    0.7727299    3.8774144    4.4345458   -2.1142776   0.13550099 
+  100000    18.444746   -1.2456693   0.86061526     3.468696    4.5264336   -2.4239851  0.074369539 
+Loop time of 2.52011 on 4 procs for 100000 steps with 34 atoms
+
+Performance: 6856.851 ns/day, 0.004 hours/ns, 39680.850 timesteps/s
+98.8% CPU use with 4 MPI tasks x no OpenMP threads
+
+MPI task timing breakdown:
+Section |  min time  |  avg time  |  max time  |%varavg| %total
+---------------------------------------------------------------
+Pair    | 0.072506   | 0.28131    | 0.69088    |  46.2 | 11.16
+Bond    | 0.050544   | 0.45307    | 0.9416     |  57.6 | 17.98
+Neigh   | 0.0060885  | 0.0061619  | 0.0062056  |   0.1 |  0.24
+Comm    | 0.44686    | 1.3679     | 2.0111     |  53.5 | 54.28
+Output  | 0.0028057  | 0.0029956  | 0.003264   |   0.3 |  0.12
+Modify  | 0.028202   | 0.095174   | 0.15782    |  19.8 |  3.78
+Other   |            | 0.3135     |            |       | 12.44
+
+Nlocal:    8.5 ave 14 max 2 min
+Histogram: 1 0 1 0 0 0 0 0 0 2
+Nghost:    25.5 ave 32 max 20 min
+Histogram: 2 0 0 0 0 0 0 1 0 1
+Neighs:    98.75 ave 242 max 31 min
+Histogram: 2 0 1 0 0 0 0 0 0 1
+
+Total # of neighbors = 395
+Ave neighs/atom = 11.6176
+Ave special neighs/atom = 9.52941
+Neighbor list builds = 246
+Dangerous builds = 0
+Total wall time: 0:00:02
diff -Naur lammps-11Apr17/src/KOKKOS/verlet_kokkos.cpp lammps-13Apr17/src/KOKKOS/verlet_kokkos.cpp
--- lammps-11Apr17/src/KOKKOS/verlet_kokkos.cpp	2017-01-20 13:20:31.000000000 -0700
+++ lammps-13Apr17/src/KOKKOS/verlet_kokkos.cpp	2017-04-11 23:31:58.794195000 -0600
@@ -64,14 +64,17 @@
    setup before run
 ------------------------------------------------------------------------- */
 
-void VerletKokkos::setup()
+void VerletKokkos::setup(int flag)
 {
   if (comm->me == 0 && screen) {
     fprintf(screen,"Setting up Verlet run ...\n");
-    fprintf(screen,"  Unit style    : %s\n", update->unit_style);
-    fprintf(screen,"  Current step  : " BIGINT_FORMAT "\n", update->ntimestep);
-    fprintf(screen,"  Time step     : %g\n", update->dt);
-    timer->print_timeout(screen);
+    if (flag) {
+      fprintf(screen,"  Unit style    : %s\n", update->unit_style);
+      fprintf(screen,"  Current step  : " BIGINT_FORMAT "\n",
+              update->ntimestep);
+      fprintf(screen,"  Time step     : %g\n", update->dt);
+      timer->print_timeout(screen);
+    }
   }
 
   update->setupflag = 1;
@@ -169,7 +172,7 @@
   if (force->newton) comm->reverse_comm();
 
   modify->setup(vflag);
-  output->setup();
+  output->setup(flag);
   lmp->kokkos->auto_sync = 1;
   update->setupflag = 1;
 }
diff -Naur lammps-11Apr17/src/KOKKOS/verlet_kokkos.h lammps-13Apr17/src/KOKKOS/verlet_kokkos.h
--- lammps-11Apr17/src/KOKKOS/verlet_kokkos.h	2016-03-18 08:50:28.000000000 -0600
+++ lammps-13Apr17/src/KOKKOS/verlet_kokkos.h	2017-04-11 23:31:58.794195000 -0600
@@ -29,7 +29,7 @@
  public:
   VerletKokkos(class LAMMPS *, int, char **);
   ~VerletKokkos() {}
-  void setup();
+  void setup(int flag=1);
   void setup_minimal(int);
   void run(int);
 
diff -Naur lammps-11Apr17/src/MC/fix_gcmc.cpp lammps-13Apr17/src/MC/fix_gcmc.cpp
--- lammps-11Apr17/src/MC/fix_gcmc.cpp	2017-04-09 17:56:41.000000000 -0600
+++ lammps-13Apr17/src/MC/fix_gcmc.cpp	2017-04-12 12:45:29.959255000 -0600
@@ -260,7 +260,7 @@
   grouptypebits = NULL;
   energy_intra = 0.0;
   tfac_insert = 1.0;
-  overlap_cutoff = 0.0;
+  overlap_cutoffsq = 0.0;
   overlap_flag = 0;
 
   int iarg = 0;
@@ -366,7 +366,8 @@
       iarg += 2;
     } else if (strcmp(arg[iarg],"overlap_cutoff") == 0) {
       if (iarg+2 > narg) error->all(FLERR,"Illegal fix gcmc command");
-      overlap_cutoff = force->numeric(FLERR,arg[iarg+1]);
+      double rtmp = force->numeric(FLERR,arg[iarg+1]);
+      overlap_cutoffsq = rtmp*rtmp;
       overlap_flag = 1;
       iarg += 2;
     } else error->all(FLERR,"Illegal fix gcmc command");
@@ -2146,7 +2147,7 @@
     // if overlap check requested, if overlap,
     // return signal value for energy 
 
-    if (overlap_flag && rsq < overlap_cutoff)
+    if (overlap_flag && rsq < overlap_cutoffsq)
       return MAXENERGYSIGNAL;
     
     if (rsq < cutsq[itype][jtype])
@@ -2216,7 +2217,7 @@
         delz = x[i][2] - x[j][2];
         rsq = delx*delx + dely*dely + delz*delz;
       
-        if (rsq < overlap_cutoff) {
+        if (rsq < overlap_cutoffsq) {
           overlaptest = 1;
           break;
         }
diff -Naur lammps-11Apr17/src/MC/fix_gcmc.h lammps-13Apr17/src/MC/fix_gcmc.h
--- lammps-11Apr17/src/MC/fix_gcmc.h	2017-04-09 17:56:41.000000000 -0600
+++ lammps-13Apr17/src/MC/fix_gcmc.h	2017-04-12 12:45:29.959255000 -0600
@@ -112,7 +112,7 @@
   double **cutsq;
   double **atom_coord;
   imageint imagezero;
-  double overlap_cutoff;
+  double overlap_cutoffsq; // square distance cutoff for overlap 
   int overlap_flag;
   
   double energy_intra;
diff -Naur lammps-11Apr17/src/PYTHON/python.cpp lammps-13Apr17/src/PYTHON/python.cpp
--- lammps-11Apr17/src/PYTHON/python.cpp	2017-04-11 08:33:23.000000000 -0600
+++ lammps-13Apr17/src/PYTHON/python.cpp	2017-04-12 14:32:56.975714000 -0600
@@ -45,23 +45,25 @@
 
 Python::~Python()
 {
-  // clean up
-  PyGILState_STATE gstate = PyGILState_Ensure();
-
-  for (int i = 0; i < nfunc; i++) {
-    delete [] pfuncs[i].name;
-    deallocate(i);
-    PyObject *pFunc = (PyObject *) pfuncs[i].pFunc;
-    Py_XDECREF(pFunc);
-  }
+  if(pyMain) {
+    // clean up
+    PyGILState_STATE gstate = PyGILState_Ensure();
+
+    for (int i = 0; i < nfunc; i++) {
+      delete [] pfuncs[i].name;
+      deallocate(i);
+      PyObject *pFunc = (PyObject *) pfuncs[i].pFunc;
+      Py_XDECREF(pFunc);
+    }
 
-  // shutdown Python interpreter
+    // shutdown Python interpreter
 
-  if (pyMain && !external_interpreter) {
-    Py_Finalize();
-  }
-  else {
-    PyGILState_Release(gstate);
+    if (!external_interpreter) {
+      Py_Finalize();
+    }
+    else {
+      PyGILState_Release(gstate);
+    }
   }
 
   memory->sfree(pfuncs);
diff -Naur lammps-11Apr17/src/version.h lammps-13Apr17/src/version.h
--- lammps-11Apr17/src/version.h	2017-04-11 08:59:36.000000000 -0600
+++ lammps-13Apr17/src/version.h	2017-04-13 10:50:28.380040000 -0600
@@ -1 +1 @@
-#define LAMMPS_VERSION "11 Apr 2017"
+#define LAMMPS_VERSION "13 Apr 2017"