21Dec16 version files changed by 6Jan17 patch:

doc/html/.buildinfo
doc/html/Manual.html
doc/html/PDF/colvars-refman-lammps.pdf
doc/html/Section_commands.html
doc/html/_images/tutorial_additional_changes.png
doc/html/_images/tutorial_automated_checks.png
doc/html/_images/tutorial_automated_checks_passed.png
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doc/html/fix_adapt.html
doc/html/fix_adapt_fep.html
doc/html/fix_addforce.html
doc/html/fix_addtorque.html
doc/html/fix_append_atoms.html
doc/html/fix_atc.html
doc/html/fix_atom_swap.html
doc/html/fix_ave_atom.html
doc/html/fix_ave_chunk.html
doc/html/fix_ave_correlate.html
doc/html/fix_ave_correlate_long.html
doc/html/fix_ave_histo.html
doc/html/fix_ave_time.html
doc/html/fix_aveforce.html
doc/html/fix_balance.html
doc/html/fix_bond_break.html
doc/html/fix_bond_create.html
doc/html/fix_bond_swap.html
doc/html/fix_box_relax.html
doc/html/fix_cmap.html
doc/html/fix_colvars.html
doc/html/fix_controller.html
doc/html/fix_deform.html
doc/html/fix_deposit.html
doc/html/fix_dpd_energy.html
doc/html/fix_drag.html
doc/html/fix_drude.html
doc/html/fix_drude_transform.html
doc/html/fix_dt_reset.html
doc/html/fix_efield.html
doc/html/fix_ehex.html
doc/html/fix_enforce2d.html
doc/html/fix_eos_cv.html
doc/html/fix_eos_table.html
doc/html/fix_eos_table_rx.html
doc/html/fix_evaporate.html
doc/html/fix_external.html
doc/html/fix_flow_gauss.html
doc/html/fix_freeze.html
doc/html/fix_gcmc.html
doc/html/fix_gld.html
doc/html/fix_gle.html
doc/html/fix_gravity.html
doc/html/fix_grem.html
doc/html/fix_halt.html
doc/html/fix_heat.html
doc/html/fix_imd.html
doc/html/fix_indent.html
doc/html/fix_ipi.html
doc/html/fix_langevin.html
doc/html/fix_langevin_drude.html
doc/html/fix_langevin_eff.html
doc/html/fix_lb_fluid.html
doc/html/fix_lb_momentum.html
doc/html/fix_lb_pc.html
doc/html/fix_lb_rigid_pc_sphere.html
doc/html/fix_lb_viscous.html
doc/html/fix_lineforce.html
doc/html/fix_manifoldforce.html
doc/html/fix_meso.html
doc/html/fix_meso_stationary.html
doc/html/fix_momentum.html
doc/html/fix_move.html
doc/html/fix_msst.html
doc/html/fix_neb.html
doc/html/fix_nh.html
doc/html/fix_nh_eff.html
doc/html/fix_nph_asphere.html
doc/html/fix_nph_body.html
doc/html/fix_nph_sphere.html
doc/html/fix_nphug.html
doc/html/fix_npt_asphere.html
doc/html/fix_npt_body.html
doc/html/fix_npt_sphere.html
doc/html/fix_nve.html
doc/html/fix_nve_asphere.html
doc/html/fix_nve_asphere_noforce.html
doc/html/fix_nve_body.html
doc/html/fix_nve_eff.html
doc/html/fix_nve_limit.html
doc/html/fix_nve_line.html
doc/html/fix_nve_manifold_rattle.html
doc/html/fix_nve_noforce.html
doc/html/fix_nve_sphere.html
doc/html/fix_nve_tri.html
doc/html/fix_nvk.html
doc/html/fix_nvt_asphere.html
doc/html/fix_nvt_body.html
doc/html/fix_nvt_manifold_rattle.html
doc/html/fix_nvt_sllod.html
doc/html/fix_nvt_sllod_eff.html
doc/html/fix_nvt_sphere.html
doc/html/fix_oneway.html
doc/html/fix_orient.html
doc/html/fix_phonon.html
doc/html/fix_pimd.html
doc/html/fix_planeforce.html
doc/html/fix_poems.html
doc/html/fix_pour.html
doc/html/fix_press_berendsen.html
doc/html/fix_print.html
doc/html/fix_property_atom.html
doc/html/fix_qbmsst.html
doc/html/fix_qeq.html
doc/html/fix_qeq_comb.html
doc/html/fix_qeq_reax.html
doc/html/fix_qmmm.html
doc/html/fix_qtb.html
doc/html/fix_reax_bonds.html
doc/html/fix_reaxc_species.html
doc/html/fix_recenter.html
doc/html/fix_restrain.html
doc/html/fix_rigid.html
doc/html/fix_rx.html
doc/html/fix_saed_vtk.html
doc/html/fix_setforce.html
doc/html/fix_shake.html
doc/html/fix_shardlow.html
doc/html/fix_smd.html
doc/html/fix_smd_adjust_dt.html
doc/html/fix_smd_integrate_tlsph.html
doc/html/fix_smd_integrate_ulsph.html
doc/html/fix_smd_move_triangulated_surface.html
doc/html/fix_smd_setvel.html
doc/html/fix_smd_wall_surface.html
doc/html/fix_spring.html
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doc/html/fix_spring_self.html
doc/html/fix_srd.html
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doc/html/fix_store_state.html
doc/html/fix_temp_berendsen.html
doc/html/fix_temp_csvr.html
doc/html/fix_temp_rescale.html
doc/html/fix_temp_rescale_eff.html
doc/html/fix_tfmc.html
doc/html/fix_thermal_conductivity.html
doc/html/fix_ti_spring.html
doc/html/fix_tmd.html
doc/html/fix_ttm.html
doc/html/fix_tune_kspace.html
doc/html/fix_vector.html
doc/html/fix_viscosity.html
doc/html/fix_viscous.html
doc/html/fix_wall.html
doc/html/fix_wall_gran.html
doc/html/fix_wall_gran_region.html
doc/html/fix_wall_piston.html
doc/html/fix_wall_reflect.html
doc/html/fix_wall_region.html
doc/html/fix_wall_srd.html
doc/html/fixes.html
doc/html/genindex.html
doc/html/objects.inv
doc/html/pair_exp6_rx.html
doc/html/pair_multi_lucy_rx.html
doc/html/pair_table_rx.html
doc/html/tutorial_github.html
doc/src/JPG/tutorial_additional_changes.png
doc/src/JPG/tutorial_automated_checks.png
doc/src/JPG/tutorial_automated_checks_passed.png
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doc/src/Manual.txt
doc/src/PDF/colvars-refman-lammps.pdf
doc/src/Section_commands.txt
doc/src/fix_colvars.txt
doc/src/fix_eos_table_rx.txt
doc/src/fix_momentum.txt
doc/src/fix_nvk.txt
doc/src/fixes.txt
doc/src/lammps.book
doc/src/pair_exp6_rx.txt
doc/src/pair_multi_lucy_rx.txt
doc/src/pair_table_rx.txt
doc/src/tutorial_github.txt
examples/USER/dpd/dpde-vv/log.dpde-vv.reference
examples/USER/dpd/dpdrx-shardlow/in.dpdrx-shardlow
examples/USER/dpd/dpdrx-shardlow/log.dpdrx-shardlow.reference
lib/colvars/Makefile.colvars
lib/colvars/colvar.cpp
lib/colvars/colvar.h
lib/colvars/colvaratoms.cpp
lib/colvars/colvaratoms.h
lib/colvars/colvarbias.cpp
lib/colvars/colvarbias.h
lib/colvars/colvarbias_abf.cpp
lib/colvars/colvarbias_abf.h
lib/colvars/colvarbias_alb.cpp
lib/colvars/colvarbias_alb.h
lib/colvars/colvarbias_histogram.cpp
lib/colvars/colvarbias_histogram.h
lib/colvars/colvarbias_meta.cpp
lib/colvars/colvarbias_meta.h
lib/colvars/colvarbias_restraint.cpp
lib/colvars/colvarbias_restraint.h
lib/colvars/colvarcomp.cpp
lib/colvars/colvarcomp.h
lib/colvars/colvarcomp_angles.cpp
lib/colvars/colvarcomp_coordnums.cpp
lib/colvars/colvarcomp_distances.cpp
lib/colvars/colvarcomp_protein.cpp
lib/colvars/colvarcomp_rotations.cpp
lib/colvars/colvardeps.cpp
lib/colvars/colvardeps.h
lib/colvars/colvargrid.cpp
lib/colvars/colvargrid.h
lib/colvars/colvarmodule.cpp
lib/colvars/colvarmodule.h
lib/colvars/colvarparse.cpp
lib/colvars/colvarparse.h
lib/colvars/colvarproxy.h
lib/colvars/colvarscript.cpp
lib/colvars/colvarscript.h
lib/colvars/colvartypes.cpp
lib/colvars/colvartypes.h
lib/colvars/colvarvalue.cpp
lib/colvars/colvarvalue.h
src/KOKKOS/Install.sh
src/KOKKOS/atom_vec_angle_kokkos.cpp
src/KOKKOS/atom_vec_atomic_kokkos.cpp
src/KOKKOS/atom_vec_bond_kokkos.cpp
src/KOKKOS/atom_vec_charge_kokkos.cpp
src/KOKKOS/atom_vec_full_kokkos.cpp
src/KOKKOS/atom_vec_molecular_kokkos.cpp
src/KOKKOS/comm_tiled_kokkos.cpp
src/KOKKOS/compute_temp_kokkos.h
src/KOKKOS/domain_kokkos.h
src/KOKKOS/fix_momentum_kokkos.cpp
src/KOKKOS/fix_momentum_kokkos.h
src/KOKKOS/fix_setforce_kokkos.h
src/KOKKOS/kokkos_few.h
src/KOKKOS/kokkos_type.h
src/KOKKOS/modify_kokkos.cpp
src/KOKKOS/modify_kokkos.h
src/KOKKOS/pair_buck_coul_cut_kokkos.h
src/KOKKOS/pair_buck_coul_long_kokkos.h
src/KOKKOS/pair_buck_kokkos.h
src/KOKKOS/pair_coul_cut_kokkos.h
src/KOKKOS/pair_coul_debye_kokkos.h
src/KOKKOS/pair_coul_long_kokkos.h
src/KOKKOS/pair_lj_charmm_coul_charmm_implicit_kokkos.cpp
src/KOKKOS/pair_lj_charmm_coul_charmm_implicit_kokkos.h
src/KOKKOS/pair_lj_charmm_coul_charmm_kokkos.cpp
src/KOKKOS/pair_lj_charmm_coul_charmm_kokkos.h
src/KOKKOS/pair_lj_charmm_coul_long_kokkos.cpp
src/KOKKOS/pair_lj_charmm_coul_long_kokkos.h
src/KOKKOS/pair_lj_class2_coul_cut_kokkos.cpp
src/KOKKOS/pair_lj_class2_coul_cut_kokkos.h
src/KOKKOS/pair_lj_class2_coul_long_kokkos.cpp
src/KOKKOS/pair_lj_class2_coul_long_kokkos.h
src/KOKKOS/pair_lj_class2_kokkos.cpp
src/KOKKOS/pair_lj_class2_kokkos.h
src/KOKKOS/pair_lj_cut_coul_cut_kokkos.cpp
src/KOKKOS/pair_lj_cut_coul_cut_kokkos.h
src/KOKKOS/pair_lj_cut_coul_debye_kokkos.cpp
src/KOKKOS/pair_lj_cut_coul_debye_kokkos.h
src/KOKKOS/pair_lj_cut_coul_dsf_kokkos.cpp
src/KOKKOS/pair_lj_cut_coul_dsf_kokkos.h
src/KOKKOS/pair_lj_cut_coul_long_kokkos.cpp
src/KOKKOS/pair_lj_cut_coul_long_kokkos.h
src/KOKKOS/pair_lj_cut_kokkos.cpp
src/KOKKOS/pair_lj_cut_kokkos.h
src/KOKKOS/pair_lj_expand_kokkos.cpp
src/KOKKOS/pair_lj_expand_kokkos.h
src/KOKKOS/pair_lj_gromacs_coul_gromacs_kokkos.cpp
src/KOKKOS/pair_lj_gromacs_coul_gromacs_kokkos.h
src/KOKKOS/pair_lj_gromacs_kokkos.cpp
src/KOKKOS/pair_lj_gromacs_kokkos.h
src/KOKKOS/pair_lj_sdk_kokkos.cpp
src/KOKKOS/pair_lj_sdk_kokkos.h
src/KOKKOS/pair_table_kokkos.cpp
src/KOKKOS/pair_table_kokkos.h
src/KOKKOS/pair_tersoff_kokkos.cpp
src/KOKKOS/pair_tersoff_kokkos.h
src/KOKKOS/pair_tersoff_mod_kokkos.cpp
src/KOKKOS/pair_tersoff_mod_kokkos.h
src/KOKKOS/pair_tersoff_zbl_kokkos.cpp
src/KOKKOS/pair_tersoff_zbl_kokkos.h
src/KOKKOS/region_block_kokkos.cpp
src/KOKKOS/region_block_kokkos.h
src/KSPACE/pair_lj_cut_tip4p_long.cpp
src/KSPACE/pair_lj_long_tip4p_long.cpp
src/KSPACE/pair_tip4p_long.cpp
src/KSPACE/pppm_cg.cpp
src/KSPACE/pppm_disp_tip4p.cpp
src/KSPACE/pppm_tip4p.cpp
src/MAKE/MACHINES/Makefile.white
src/MOLECULE/fix_cmap.cpp
src/MOLECULE/fix_cmap.h
src/MOLECULE/pair_lj_cut_tip4p_cut.cpp
src/MOLECULE/pair_tip4p_cut.cpp
src/OPT/pair_lj_cut_tip4p_long_opt.cpp
src/QEQ/fix_qeq.cpp
src/QEQ/fix_qeq.h
src/REPLICA/compute_event_displace.cpp
src/REPLICA/fix_neb.cpp
src/USER-ATC/fix_atc.cpp
src/USER-ATC/fix_atc.h
src/USER-COLVARS/README
src/USER-COLVARS/colvarproxy_lammps.cpp
src/USER-COLVARS/colvarproxy_lammps.h
src/USER-COLVARS/fix_colvars.cpp
src/USER-COLVARS/fix_colvars.h
src/USER-COLVARS/group_ndx.cpp
src/USER-COLVARS/group_ndx.h
src/USER-COLVARS/ndx_group.cpp
src/USER-COLVARS/ndx_group.h
src/USER-DPD/fix_eos_table_rx.cpp
src/USER-DPD/fix_eos_table_rx.h
src/USER-DPD/fix_rx.cpp
src/USER-DPD/fix_shardlow.cpp
src/USER-DPD/fix_shardlow.h
src/USER-DPD/pair_exp6_rx.cpp
src/USER-DPD/pair_exp6_rx.h
src/USER-DPD/pair_multi_lucy_rx.cpp
src/USER-DPD/pair_multi_lucy_rx.h
src/USER-DPD/pair_table_rx.cpp
src/USER-DPD/pair_table_rx.h
src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp
src/USER-FEP/pair_tip4p_long_soft.cpp
src/USER-INTEL/fix_intel.cpp
src/USER-INTEL/fix_intel.h
src/USER-MISC/README
src/USER-MISC/fix_nvk.cpp
src/USER-MISC/fix_nvk.h
src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp
src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp
src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp
src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp
src/USER-OMP/pair_tip4p_cut_omp.cpp
src/USER-OMP/pair_tip4p_long_omp.cpp
src/USER-OMP/pair_tip4p_long_soft_omp.cpp
src/USER-OMP/pppm_disp_tip4p_omp.cpp
src/USER-OMP/pppm_tip4p_omp.cpp
src/USER-REAXC/fix_qeq_reax.cpp
src/USER-REAXC/fix_qeq_reax.h
src/atom.cpp
src/domain.cpp
src/domain.h
src/finish.cpp
src/fix.h
src/fix_momentum.h
src/fix_restrain.cpp
src/force.cpp
src/min.cpp
src/modify.cpp
src/modify.h
src/neighbor.cpp
src/pair_table.cpp
src/pair_table.h
src/respa.cpp
src/run.cpp
src/verlet.cpp
src/version.h