version files changed by 31Mar17 patch:

LICENSE
README
bench/Cu_u3.eam
bench/FERMI/README
bench/FERMI/in.eam
bench/FERMI/in.eam.titan
bench/FERMI/in.lj
bench/FERMI/in.lj.titan
bench/FERMI/in.rhodo
bench/FERMI/in.rhodo.scaled.titan
bench/FERMI/in.rhodo.split.titan
bench/KEPLER/Makefile.cpu
bench/KEPLER/Makefile.cuda
bench/KEPLER/Makefile.gpu
bench/KEPLER/Makefile.gpu.double
bench/KEPLER/Makefile.gpu.mixed
bench/KEPLER/Makefile.gpu.single
bench/KEPLER/Makefile.intel.cpu
bench/KEPLER/Makefile.kokkos.cuda
bench/KEPLER/Makefile.kokkos.omp
bench/KEPLER/Makefile.omp
bench/KEPLER/Makefile.opt
bench/KEPLER/README
bench/KEPLER/build.py
bench/KEPLER/in.lj
bench/KEPLER/run_cpu.sh
bench/KEPLER/run_cuda.sh
bench/KEPLER/run_gpu.sh
bench/KEPLER/run_intel_cpu.sh
bench/KEPLER/run_kokkos_cuda.sh
bench/KEPLER/run_kokkos_omp.sh
bench/KEPLER/run_omp.sh
bench/KEPLER/run_opt.sh
bench/KEPLER/run_strong.sh
bench/KEPLER/run_weak.sh
bench/POTENTIALS/CH.airebo
bench/POTENTIALS/CdTe.bop
bench/POTENTIALS/Cu_u3.eam
bench/POTENTIALS/Ni.adp
bench/POTENTIALS/Ni.meam
bench/POTENTIALS/README
bench/POTENTIALS/Si.sw
bench/POTENTIALS/Si.tersoff
bench/POTENTIALS/ffield.comb
bench/POTENTIALS/ffield.eim
bench/POTENTIALS/ffield.reax
bench/POTENTIALS/in.adp
bench/POTENTIALS/in.airebo
bench/POTENTIALS/in.bop
bench/POTENTIALS/in.comb
bench/POTENTIALS/in.dpd
bench/POTENTIALS/in.eam
bench/POTENTIALS/in.eff
bench/POTENTIALS/in.eim
bench/POTENTIALS/in.fene
bench/POTENTIALS/in.gb
bench/POTENTIALS/in.granular
bench/POTENTIALS/in.lj
bench/POTENTIALS/in.meam
bench/POTENTIALS/in.peri
bench/POTENTIALS/in.protein
bench/POTENTIALS/in.reax
bench/POTENTIALS/in.reaxc
bench/POTENTIALS/in.rebo
bench/POTENTIALS/in.spce
bench/POTENTIALS/in.sw
bench/POTENTIALS/in.tersoff
bench/POTENTIALS/library.meam
bench/POTENTIALS/log.26Jun12.adp.1
bench/POTENTIALS/log.26Jun12.adp.4
bench/POTENTIALS/log.26Jun12.airebo.1
bench/POTENTIALS/log.26Jun12.airebo.4
bench/POTENTIALS/log.26Jun12.bop.1
bench/POTENTIALS/log.26Jun12.bop.4
bench/POTENTIALS/log.26Jun12.comb.1
bench/POTENTIALS/log.26Jun12.comb.4
bench/POTENTIALS/log.26Jun12.dpd.1
bench/POTENTIALS/log.26Jun12.dpd.4
bench/POTENTIALS/log.26Jun12.eam.1
bench/POTENTIALS/log.26Jun12.eam.4
bench/POTENTIALS/log.26Jun12.eff.1
bench/POTENTIALS/log.26Jun12.eff.4
bench/POTENTIALS/log.26Jun12.eim.1
bench/POTENTIALS/log.26Jun12.eim.4
bench/POTENTIALS/log.26Jun12.fene.1
bench/POTENTIALS/log.26Jun12.fene.4
bench/POTENTIALS/log.26Jun12.gb.1
bench/POTENTIALS/log.26Jun12.gb.4
bench/POTENTIALS/log.26Jun12.granular.1
bench/POTENTIALS/log.26Jun12.granular.4
bench/POTENTIALS/log.26Jun12.lj.1
bench/POTENTIALS/log.26Jun12.lj.4
bench/POTENTIALS/log.26Jun12.meam.1
bench/POTENTIALS/log.26Jun12.meam.4
bench/POTENTIALS/log.26Jun12.peri.1
bench/POTENTIALS/log.26Jun12.peri.4
bench/POTENTIALS/log.26Jun12.protein.1
bench/POTENTIALS/log.26Jun12.protein.4
bench/POTENTIALS/log.26Jun12.reax.1
bench/POTENTIALS/log.26Jun12.reax.4
bench/POTENTIALS/log.26Jun12.reaxc.1
bench/POTENTIALS/log.26Jun12.reaxc.4
bench/POTENTIALS/log.26Jun12.rebo.1
bench/POTENTIALS/log.26Jun12.rebo.4
bench/POTENTIALS/log.26Jun12.spce.1
bench/POTENTIALS/log.26Jun12.spce.4
bench/POTENTIALS/log.26Jun12.sw.1
bench/POTENTIALS/log.26Jun12.sw.4
bench/POTENTIALS/log.26Jun12.tersoff.1
bench/POTENTIALS/log.26Jun12.tersoff.4
bench/POTENTIALS/reax_defs.h
bench/README
bench/data.chain
bench/data.chute
bench/data.rhodo
bench/in.chain
bench/in.chain.scaled
bench/in.chute
bench/in.chute.scaled
bench/in.eam
bench/in.lj
bench/in.rhodo
bench/in.rhodo.scaled
bench/log.6Oct16.chain.fixed.icc.1
bench/log.6Oct16.chain.fixed.icc.4
bench/log.6Oct16.chain.scaled.icc.4
bench/log.6Oct16.chute.fixed.icc.1
bench/log.6Oct16.chute.fixed.icc.4
bench/log.6Oct16.chute.scaled.icc.4
bench/log.6Oct16.eam.fixed.icc.1
bench/log.6Oct16.eam.fixed.icc.4
bench/log.6Oct16.eam.scaled.icc.4
bench/log.6Oct16.lj.fixed.icc.1
bench/log.6Oct16.lj.fixed.icc.4
bench/log.6Oct16.lj.scaled.icc.4
bench/log.6Oct16.rhodo.fixed.icc.1
bench/log.6Oct16.rhodo.fixed.icc.4
bench/log.6Oct16.rhodo.scaled.icc.4
doc/Makefile
doc/README
doc/src/Developer/classes.fig
doc/src/Developer/classes.pdf
doc/src/Developer/developer.tex
doc/src/Eqs/angle_charmm.jpg
doc/src/Eqs/angle_charmm.tex
doc/src/Eqs/angle_class2.jpg
doc/src/Eqs/angle_class2.tex
doc/src/Eqs/angle_cosine.jpg
doc/src/Eqs/angle_cosine.tex
doc/src/Eqs/angle_cosine_delta.jpg
doc/src/Eqs/angle_cosine_delta.tex
doc/src/Eqs/angle_cosine_periodic.jpg
doc/src/Eqs/angle_cosine_periodic.tex
doc/src/Eqs/angle_cosine_shift.jpg
doc/src/Eqs/angle_cosine_shift.tex
doc/src/Eqs/angle_cosine_shift_exp.jpg
doc/src/Eqs/angle_cosine_shift_exp.tex
doc/src/Eqs/angle_cosine_squared.jpg
doc/src/Eqs/angle_cosine_squared.tex
doc/src/Eqs/angle_dipole_couple.jpg
doc/src/Eqs/angle_dipole_couple.tex
doc/src/Eqs/angle_dipole_gamma.jpg
doc/src/Eqs/angle_dipole_gamma.tex
doc/src/Eqs/angle_dipole_potential.jpg
doc/src/Eqs/angle_dipole_potential.tex
doc/src/Eqs/angle_dipole_torque.jpg
doc/src/Eqs/angle_dipole_torque.tex
doc/src/Eqs/angle_fourier.jpg
doc/src/Eqs/angle_fourier.tex
doc/src/Eqs/angle_fourier_simple.jpg
doc/src/Eqs/angle_fourier_simple.tex
doc/src/Eqs/angle_harmonic.jpg
doc/src/Eqs/angle_harmonic.tex
doc/src/Eqs/angle_quartic.jpg
doc/src/Eqs/angle_quartic.tex
doc/src/Eqs/bond_class2.jpg
doc/src/Eqs/bond_class2.tex
doc/src/Eqs/bond_fene.jpg
doc/src/Eqs/bond_fene.tex
doc/src/Eqs/bond_fene_expand.jpg
doc/src/Eqs/bond_fene_expand.tex
doc/src/Eqs/bond_harmonic.jpg
doc/src/Eqs/bond_harmonic.tex
doc/src/Eqs/bond_harmonic_shift.jpg
doc/src/Eqs/bond_harmonic_shift.tex
doc/src/Eqs/bond_harmonic_shift_cut.jpg
doc/src/Eqs/bond_harmonic_shift_cut.tex
doc/src/Eqs/bond_morse.jpg
doc/src/Eqs/bond_morse.tex
doc/src/Eqs/bond_nonlinear.jpg
doc/src/Eqs/bond_nonlinear.tex
doc/src/Eqs/bond_oxdna_fene.jpg
doc/src/Eqs/bond_oxdna_fene.tex
doc/src/Eqs/bond_quartic.jpg
doc/src/Eqs/bond_quartic.tex
doc/src/Eqs/box.jpg
doc/src/Eqs/box.tex
doc/src/Eqs/box_inverse.jpg
doc/src/Eqs/box_inverse.tex
doc/src/Eqs/centro_symmetry.jpg
doc/src/Eqs/centro_symmetry.tex
doc/src/Eqs/cna_cutoff1.jpg
doc/src/Eqs/cna_cutoff1.tex
doc/src/Eqs/cna_cutoff2.jpg
doc/src/Eqs/cna_cutoff2.tex
doc/src/Eqs/compute_dpd.jpg
doc/src/Eqs/compute_dpd.tex
doc/src/Eqs/compute_fep_bar.jpg
doc/src/Eqs/compute_fep_bar.tex
doc/src/Eqs/compute_fep_fdti.jpg
doc/src/Eqs/compute_fep_fdti.tex
doc/src/Eqs/compute_fep_fep.jpg
doc/src/Eqs/compute_fep_fep.tex
doc/src/Eqs/compute_fep_lambda.jpg
doc/src/Eqs/compute_fep_lambda.tex
doc/src/Eqs/compute_fep_ti.jpg
doc/src/Eqs/compute_fep_ti.tex
doc/src/Eqs/compute_fep_u.jpg
doc/src/Eqs/compute_fep_u.tex
doc/src/Eqs/compute_fep_vol.jpg
doc/src/Eqs/compute_fep_vol.tex
doc/src/Eqs/compute_gyration.jpg
doc/src/Eqs/compute_gyration.tex
doc/src/Eqs/compute_msd_nongauss.jpg
doc/src/Eqs/compute_msd_nongauss.tex
doc/src/Eqs/compute_saed1.jpg
doc/src/Eqs/compute_saed1.tex
doc/src/Eqs/compute_saed2.jpg
doc/src/Eqs/compute_saed2.tex
doc/src/Eqs/compute_saed3.jpg
doc/src/Eqs/compute_saed3.tex
doc/src/Eqs/compute_sna_atom1.jpg
doc/src/Eqs/compute_sna_atom1.tex
doc/src/Eqs/compute_sna_atom2.jpg
doc/src/Eqs/compute_sna_atom2.tex
doc/src/Eqs/compute_sna_atom3.jpg
doc/src/Eqs/compute_sna_atom3.tex
doc/src/Eqs/compute_sna_atom4.jpg
doc/src/Eqs/compute_sna_atom4.tex
doc/src/Eqs/compute_sna_atom5.jpg
doc/src/Eqs/compute_sna_atom5.tex
doc/src/Eqs/compute_sna_atom6.jpg
doc/src/Eqs/compute_sna_atom6.tex
doc/src/Eqs/compute_xrd1.jpg
doc/src/Eqs/compute_xrd1.tex
doc/src/Eqs/compute_xrd2.jpg
doc/src/Eqs/compute_xrd2.tex
doc/src/Eqs/compute_xrd3.jpg
doc/src/Eqs/compute_xrd3.tex
doc/src/Eqs/compute_xrd4.jpg
doc/src/Eqs/compute_xrd4.tex
doc/src/Eqs/compute_xrd5.jpg
doc/src/Eqs/compute_xrd5.tex
doc/src/Eqs/dihedral_charmm.jpg
doc/src/Eqs/dihedral_charmm.tex
doc/src/Eqs/dihedral_class2.jpg
doc/src/Eqs/dihedral_class2.tex
doc/src/Eqs/dihedral_cosine_shift_exp.jpg
doc/src/Eqs/dihedral_cosine_shift_exp.tex
doc/src/Eqs/dihedral_fourier.jpg
doc/src/Eqs/dihedral_fourier.tex
doc/src/Eqs/dihedral_harmonic.jpg
doc/src/Eqs/dihedral_harmonic.tex
doc/src/Eqs/dihedral_helix.jpg
doc/src/Eqs/dihedral_helix.tex
doc/src/Eqs/dihedral_multi_harmonic.jpg
doc/src/Eqs/dihedral_multi_harmonic.tex
doc/src/Eqs/dihedral_nharmonic.jpg
doc/src/Eqs/dihedral_nharmonic.tex
doc/src/Eqs/dihedral_opls.jpg
doc/src/Eqs/dihedral_opls.tex
doc/src/Eqs/dihedral_quadratic.jpg
doc/src/Eqs/dihedral_quadratic.tex
doc/src/Eqs/dihedral_spherical.jpg
doc/src/Eqs/dihedral_spherical.tex
doc/src/Eqs/dreiding_hbond.jpg
doc/src/Eqs/eff_ECP1.jpg
doc/src/Eqs/eff_ECP1.tex
doc/src/Eqs/eff_ECP2.jpg
doc/src/Eqs/eff_ECP2.tex
doc/src/Eqs/eff_KE.jpg
doc/src/Eqs/eff_KE.tex
doc/src/Eqs/eff_NN.jpg
doc/src/Eqs/eff_NN.tex
doc/src/Eqs/eff_Ne.jpg
doc/src/Eqs/eff_Ne.tex
doc/src/Eqs/eff_Pauli.jpg
doc/src/Eqs/eff_Pauli.tex
doc/src/Eqs/eff_ee.jpg
doc/src/Eqs/eff_ee.tex
doc/src/Eqs/eff_energy_expression.jpg
doc/src/Eqs/eff_energy_expression.tex
doc/src/Eqs/fix_box_relax1.jpg
doc/src/Eqs/fix_box_relax1.tex
doc/src/Eqs/fix_box_relax2.jpg
doc/src/Eqs/fix_box_relax2.tex
doc/src/Eqs/fix_controller1.jpg
doc/src/Eqs/fix_controller1.tex
doc/src/Eqs/fix_controller2.jpg
doc/src/Eqs/fix_controller2.tex
doc/src/Eqs/fix_ehex_eom.jpg
doc/src/Eqs/fix_ehex_eom.tex
doc/src/Eqs/fix_ehex_f.jpg
doc/src/Eqs/fix_ehex_f.tex
doc/src/Eqs/fix_eos-cv.jpg
doc/src/Eqs/fix_eos-cv.tex
doc/src/Eqs/fix_eos_table_rx.jpg
doc/src/Eqs/fix_eos_table_rx.tex
doc/src/Eqs/fix_gcmc1.jpg
doc/src/Eqs/fix_gcmc1.tex
doc/src/Eqs/fix_gcmc2.jpg
doc/src/Eqs/fix_gcmc2.tex
doc/src/Eqs/fix_gcmc3.jpg
doc/src/Eqs/fix_gcmc3.tex
doc/src/Eqs/fix_gld1.jpg
doc/src/Eqs/fix_gld1.tex
doc/src/Eqs/fix_grem.jpg
doc/src/Eqs/fix_grem.tex
doc/src/Eqs/fix_lb_fluid_boltzmann.jpg
doc/src/Eqs/fix_lb_fluid_boltzmann.tex
doc/src/Eqs/fix_lb_fluid_fluidforce.jpg
doc/src/Eqs/fix_lb_fluid_fluidforce.tex
doc/src/Eqs/fix_lb_fluid_gammadefault.jpg
doc/src/Eqs/fix_lb_fluid_gammadefault.tex
doc/src/Eqs/fix_lb_fluid_navierstokes.jpg
doc/src/Eqs/fix_lb_fluid_navierstokes.tex
doc/src/Eqs/fix_lb_fluid_properties.jpg
doc/src/Eqs/fix_lb_fluid_properties.tex
doc/src/Eqs/fix_lb_fluid_stress.jpg
doc/src/Eqs/fix_lb_fluid_stress.tex
doc/src/Eqs/fix_lb_fluid_viscosity.jpg
doc/src/Eqs/fix_lb_fluid_viscosity.tex
doc/src/Eqs/fix_nh1.jpg
doc/src/Eqs/fix_nh1.tex
doc/src/Eqs/fix_nphug.jpg
doc/src/Eqs/fix_nphug.tex
doc/src/Eqs/fix_orient_fcc.jpg
doc/src/Eqs/fix_orient_fcc.tex
doc/src/Eqs/fix_pimd.jpg
doc/src/Eqs/fix_pimd.tex
doc/src/Eqs/fix_rattle_constraints.jpg
doc/src/Eqs/fix_rattle_constraints.tex
doc/src/Eqs/fix_rattle_rij.jpg
doc/src/Eqs/fix_rattle_rij.tex
doc/src/Eqs/fix_rx.jpg
doc/src/Eqs/fix_rx.tex
doc/src/Eqs/fix_rx_localTemp.jpg
doc/src/Eqs/fix_rx_localTemp.tex
doc/src/Eqs/fix_rx_localTemp2.jpg
doc/src/Eqs/fix_rx_localTemp2.tex
doc/src/Eqs/fix_rx_reaction.jpg
doc/src/Eqs/fix_rx_reaction.tex
doc/src/Eqs/fix_rx_reactionRate.jpg
doc/src/Eqs/fix_rx_reactionRate.tex
doc/src/Eqs/fix_spring_rg.jpg
doc/src/Eqs/fix_spring_rg.tex
doc/src/Eqs/fix_ti_spring_force.jpg
doc/src/Eqs/fix_ti_spring_force.tex
doc/src/Eqs/fix_ti_spring_function_1.jpg
doc/src/Eqs/fix_ti_spring_function_1.tex
doc/src/Eqs/fix_ti_spring_function_2.jpg
doc/src/Eqs/fix_ti_spring_function_2.tex
doc/src/Eqs/fix_ttm.jpg
doc/src/Eqs/fix_ttm.tex
doc/src/Eqs/fix_ttm_blast.jpg
doc/src/Eqs/fix_ttm_blast.tex
doc/src/Eqs/fix_ttm_blast1.jpg
doc/src/Eqs/fix_ttm_blast1.tex
doc/src/Eqs/fix_ttm_ce.jpg
doc/src/Eqs/fix_ttm_ce.tex
doc/src/Eqs/fix_ttm_mod.jpg
doc/src/Eqs/fix_ttm_mod.tex
doc/src/Eqs/fix_wall_colloid.jpg
doc/src/Eqs/fix_wall_colloid.tex
doc/src/Eqs/fix_wall_harmonic.jpg
doc/src/Eqs/fix_wall_harmonic.tex
doc/src/Eqs/fix_wall_lj1043.jpg
doc/src/Eqs/fix_wall_lj1043.tex
doc/src/Eqs/fix_wall_lj93.jpg
doc/src/Eqs/fix_wall_lj93.tex
doc/src/Eqs/fld.jpg
doc/src/Eqs/fld.tex
doc/src/Eqs/fld2.jpg
doc/src/Eqs/fld2.tex
doc/src/Eqs/heat_flux_J.jpg
doc/src/Eqs/heat_flux_J.tex
doc/src/Eqs/heat_flux_k.jpg
doc/src/Eqs/heat_flux_k.tex
doc/src/Eqs/hexorder.jpg
doc/src/Eqs/hexorder.tex
doc/src/Eqs/improper_class2.jpg
doc/src/Eqs/improper_class2.tex
doc/src/Eqs/improper_cossq.jpg
doc/src/Eqs/improper_cossq.tex
doc/src/Eqs/improper_cvff.jpg
doc/src/Eqs/improper_cvff.tex
doc/src/Eqs/improper_dist-1.jpg
doc/src/Eqs/improper_dist-1.tex
doc/src/Eqs/improper_fourier.jpg
doc/src/Eqs/improper_fourier.tex
doc/src/Eqs/improper_harmonic.jpg
doc/src/Eqs/improper_harmonic.tex
doc/src/Eqs/improper_ring.jpg
doc/src/Eqs/improper_ring.tex
doc/src/Eqs/improper_umbrella.jpg
doc/src/Eqs/improper_umbrella.tex
doc/src/Eqs/min_energy.jpg
doc/src/Eqs/min_energy.tex
doc/src/Eqs/orientorder.jpg
doc/src/Eqs/orientorder.tex
doc/src/Eqs/pair_adp.jpg
doc/src/Eqs/pair_adp.tex
doc/src/Eqs/pair_agni.jpg
doc/src/Eqs/pair_airebo.jpg
doc/src/Eqs/pair_airebo.tex
doc/src/Eqs/pair_beck.jpg
doc/src/Eqs/pair_beck.tex
doc/src/Eqs/pair_bop.jpg
doc/src/Eqs/pair_bop.tex
doc/src/Eqs/pair_born.jpg
doc/src/Eqs/pair_born.tex
doc/src/Eqs/pair_buck.jpg
doc/src/Eqs/pair_buck.tex
doc/src/Eqs/pair_charmm.jpg
doc/src/Eqs/pair_charmm.tex
doc/src/Eqs/pair_class2.jpg
doc/src/Eqs/pair_class2.tex
doc/src/Eqs/pair_cmm.jpg
doc/src/Eqs/pair_cmm.tex
doc/src/Eqs/pair_colloid_cc.jpg
doc/src/Eqs/pair_colloid_cc.tex
doc/src/Eqs/pair_colloid_cs.jpg
doc/src/Eqs/pair_colloid_cs.tex
doc/src/Eqs/pair_colloid_ss.jpg
doc/src/Eqs/pair_colloid_ss.tex
doc/src/Eqs/pair_comb1.jpg
doc/src/Eqs/pair_comb1.tex
doc/src/Eqs/pair_comb2.jpg
doc/src/Eqs/pair_comb2.tex
doc/src/Eqs/pair_coul_diel.jpg
doc/src/Eqs/pair_coul_diel.tex
doc/src/Eqs/pair_coul_dsf.jpg
doc/src/Eqs/pair_coul_dsf.tex
doc/src/Eqs/pair_coul_soft.jpg
doc/src/Eqs/pair_coul_soft.tex
doc/src/Eqs/pair_coul_wolf.jpg
doc/src/Eqs/pair_coul_wolf.tex
doc/src/Eqs/pair_coulomb.jpg
doc/src/Eqs/pair_coulomb.tex
doc/src/Eqs/pair_cs.jpg
doc/src/Eqs/pair_cs.tex
doc/src/Eqs/pair_debye.jpg
doc/src/Eqs/pair_debye.tex
doc/src/Eqs/pair_dipole.jpg
doc/src/Eqs/pair_dipole.tex
doc/src/Eqs/pair_dipole_sf.jpg
doc/src/Eqs/pair_dipole_sf.tex
doc/src/Eqs/pair_dipole_sf2.jpg
doc/src/Eqs/pair_dipole_sf2.tex
doc/src/Eqs/pair_dpd.jpg
doc/src/Eqs/pair_dpd.tex
doc/src/Eqs/pair_dpd_energy.jpg
doc/src/Eqs/pair_dpd_energy.tex
doc/src/Eqs/pair_dpd_energy_terms.jpg
doc/src/Eqs/pair_dpd_energy_terms.tex
doc/src/Eqs/pair_dpd_omega.jpg
doc/src/Eqs/pair_dpd_omega.tex
doc/src/Eqs/pair_eam.jpg
doc/src/Eqs/pair_eam.tex
doc/src/Eqs/pair_eam_fs.jpg
doc/src/Eqs/pair_eam_fs.tex
doc/src/Eqs/pair_edip.jpg
doc/src/Eqs/pair_edip.tex
doc/src/Eqs/pair_eim1.jpg
doc/src/Eqs/pair_eim1.tex
doc/src/Eqs/pair_eim2.jpg
doc/src/Eqs/pair_eim2.tex
doc/src/Eqs/pair_eim3.jpg
doc/src/Eqs/pair_eim3.tex
doc/src/Eqs/pair_exp6_rx.jpg
doc/src/Eqs/pair_exp6_rx.tex
doc/src/Eqs/pair_exp6_rx_oneFluid.jpg
doc/src/Eqs/pair_exp6_rx_oneFluid.tex
doc/src/Eqs/pair_exp6_rx_oneFluid2.jpg
doc/src/Eqs/pair_exp6_rx_oneFluid2.tex
doc/src/Eqs/pair_gauss.jpg
doc/src/Eqs/pair_gauss.tex
doc/src/Eqs/pair_gauss_cut.jpg
doc/src/Eqs/pair_gauss_cut.tex
doc/src/Eqs/pair_gayberne.jpg
doc/src/Eqs/pair_gayberne.tex
doc/src/Eqs/pair_gayberne2.jpg
doc/src/Eqs/pair_gayberne2.tex
doc/src/Eqs/pair_gran_hertz.jpg
doc/src/Eqs/pair_gran_hertz.tex
doc/src/Eqs/pair_gran_hooke.jpg
doc/src/Eqs/pair_gran_hooke.tex
doc/src/Eqs/pair_gromacs.jpg
doc/src/Eqs/pair_gromacs.tex
doc/src/Eqs/pair_hbond_dreiding.jpg
doc/src/Eqs/pair_hbond_dreiding.tex
doc/src/Eqs/pair_kolmogorov_crespi_z.jpg
doc/src/Eqs/pair_kolmogorov_crespi_z.tex
doc/src/Eqs/pair_lj.jpg
doc/src/Eqs/pair_lj.tex
doc/src/Eqs/pair_lj96.jpg
doc/src/Eqs/pair_lj96.tex
doc/src/Eqs/pair_lj_cubic.jpg
doc/src/Eqs/pair_lj_cubic.tex
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examples/USER/atc/cauchy_born/in.cb_shear
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examples/USER/atc/cauchy_born/in.cb_unistrain_eam
examples/USER/atc/cauchy_born/in.cb_unistrain_eam_linear
examples/USER/atc/cauchy_born/in.cb_unistrain_linear
examples/USER/atc/cauchy_born/in.cb_volumetric
examples/USER/atc/cauchy_born/in.flying_cube
examples/USER/atc/cauchy_born/in.ftcb_constV
examples/USER/atc/cauchy_born/in.read_xref
examples/USER/atc/cauchy_born/read_xref.screen
examples/USER/atc/drift_diffusion/Ar_ddm.mat
examples/USER/atc/drift_diffusion/CNT_ddm.mat
examples/USER/atc/drift_diffusion/Cu_cddm.mat
examples/USER/atc/drift_diffusion/SiGe_ddm_schrodinger.mat
examples/USER/atc/drift_diffusion/SiVacuum_cddm_schrodinger.mat
examples/USER/atc/drift_diffusion/SiVacuum_ddm_schrodinger.mat
examples/USER/atc/drift_diffusion/Si_ddm.mat
examples/USER/atc/drift_diffusion/Si_ddm_eq.mat
examples/USER/atc/drift_diffusion/Si_ddm_schrodinger.mat
examples/USER/atc/drift_diffusion/Si_ddm_thermopower.mat
examples/USER/atc/drift_diffusion/convective_pulse.screen
examples/USER/atc/drift_diffusion/ddm_schrodinger.screen
examples/USER/atc/drift_diffusion/finite_well.screen
examples/USER/atc/drift_diffusion/in.convective_pulse
examples/USER/atc/drift_diffusion/in.ddm_schrodinger
examples/USER/atc/drift_diffusion/in.finite_well
examples/USER/atc/drift_diffusion/in.no_atoms_ddm
examples/USER/atc/drift_diffusion/in.null_material_ddm
examples/USER/atc/drift_diffusion/in.poisson1d_noatoms
examples/USER/atc/drift_diffusion/in.poisson2d_noatoms
examples/USER/atc/drift_diffusion/in.schrodinger-poisson2d_Jconstraint
examples/USER/atc/drift_diffusion/in.schrodinger-poisson2d_convective
examples/USER/atc/drift_diffusion/in.schrodinger-poisson2d_noatoms
examples/USER/atc/drift_diffusion/no_atoms_ddm.screen
examples/USER/atc/drift_diffusion/null_material_ddm.screen
examples/USER/atc/drift_diffusion/poisson1d_noatoms.screen
examples/USER/atc/drift_diffusion/poisson2d_noatoms.screen
examples/USER/atc/drift_diffusion/schrodinger-poisson2d_Jconstraint.screen
examples/USER/atc/drift_diffusion/schrodinger-poisson2d_convective.screen
examples/USER/atc/drift_diffusion/schrodinger-poisson2d_noatoms.screen
examples/USER/atc/elastic/Ar_CauchyBorn.mat
examples/USER/atc/elastic/Ar_CauchyBornLinear.mat
examples/USER/atc/elastic/Ar_damped.mat
examples/USER/atc/elastic/Ar_elastic.mat
examples/USER/atc/elastic/Ar_thermo_elastic.mat
examples/USER/atc/elastic/Au_elastic.mat
examples/USER/atc/elastic/CNT.mat
examples/USER/atc/elastic/CNT_electrostatic.mat
examples/USER/atc/elastic/CNT_electrostatic2.mat
examples/USER/atc/elastic/CNT_id.mat
examples/USER/atc/elastic/bar1d.screen
examples/USER/atc/elastic/bar1d_damped.screen
examples/USER/atc/elastic/bar1d_flux.screen
examples/USER/atc/elastic/bar1d_frac_step.screen
examples/USER/atc/elastic/bar1d_ghost_flux.screen
examples/USER/atc/elastic/bar1d_thermo_elastic.screen
examples/USER/atc/elastic/cnt_electrostatic.screen
examples/USER/atc/elastic/cnt_electrostatic2.screen
examples/USER/atc/elastic/cnt_fixed_charge.screen
examples/USER/atc/elastic/eam_energy.screen
examples/USER/atc/elastic/electron_density.screen
examples/USER/atc/elastic/electrostatic_bending.screen
examples/USER/atc/elastic/electrostatic_bending_dos.screen
examples/USER/atc/elastic/in.bar1d
examples/USER/atc/elastic/in.bar1d_damped
examples/USER/atc/elastic/in.bar1d_flux
examples/USER/atc/elastic/in.bar1d_frac_step
examples/USER/atc/elastic/in.bar1d_ghost_flux
examples/USER/atc/elastic/in.bar1d_thermo_elastic
examples/USER/atc/elastic/in.eam_energy
examples/USER/atc/elastic/in.electron_density
examples/USER/atc/elastic/in.no_atoms
examples/USER/atc/elastic/in.no_atoms_cb
examples/USER/atc/elastic/in.no_atoms_cb_linear
examples/USER/atc/elastic/no_atoms.screen
examples/USER/atc/elastic/no_atoms_cb.screen
examples/USER/atc/elastic/no_atoms_cb_linear.screen
examples/USER/atc/fluids/Ar_elastic.mat
examples/USER/atc/fluids/Ar_electrostatic.mat
examples/USER/atc/fluids/Ar_liquid.mat
examples/USER/atc/fluids/Ar_species.mat
examples/USER/atc/fluids/Ar_species_dl.mat
examples/USER/atc/fluids/Ar_thermal.mat
examples/USER/atc/fluids/Ar_visc_no_atoms.mat
examples/USER/atc/fluids/Ar_viscosity.mat
examples/USER/atc/fluids/bar1d_fluids.screen
examples/USER/atc/fluids/concentration.screen
examples/USER/atc/fluids/conducting_interface.screen
examples/USER/atc/fluids/dielectric.mat
examples/USER/atc/fluids/dielectric_interface.screen
examples/USER/atc/fluids/double_layer.screen
examples/USER/atc/fluids/in.bar1d_fluids
examples/USER/atc/fluids/in.concentration
examples/USER/atc/fluids/in.conducting_interface
examples/USER/atc/fluids/in.dielectric_interface
examples/USER/atc/fluids/in.double_layer
examples/USER/atc/fluids/in.liquid_electrostatic
examples/USER/atc/fluids/in.opp_force
examples/USER/atc/fluids/in.poisson
examples/USER/atc/fluids/in.shear_flow
examples/USER/atc/fluids/in.shear_no_atoms
examples/USER/atc/fluids/liquid_electrostatic.screen
examples/USER/atc/fluids/opp_force.screen
examples/USER/atc/fluids/poisson.screen
examples/USER/atc/fluids/shear_flow.screen
examples/USER/atc/fluids/shear_no_atoms.screen
examples/USER/atc/hardy/consistency.screen
examples/USER/atc/hardy/eam_kernel_convergence.screen
examples/USER/atc/hardy/eam_unistrain_cell.screen
examples/USER/atc/hardy/eam_unistrain_mesh.screen
examples/USER/atc/hardy/eam_unistrain_qcylinder.screen
examples/USER/atc/hardy/eam_unistrain_qsphere.screen
examples/USER/atc/hardy/eam_unistrain_step.screen
examples/USER/atc/hardy/eam_volume_stretch.screen
examples/USER/atc/hardy/eshelby_static.screen
examples/USER/atc/hardy/in.consistency
examples/USER/atc/hardy/in.eam_kernel_convergence
examples/USER/atc/hardy/in.eam_unistrain_cell
examples/USER/atc/hardy/in.eam_unistrain_mesh
examples/USER/atc/hardy/in.eam_unistrain_qcylinder
examples/USER/atc/hardy/in.eam_unistrain_qsphere
examples/USER/atc/hardy/in.eam_unistrain_step
examples/USER/atc/hardy/in.eam_volume_stretch
examples/USER/atc/hardy/in.eshelby_static
examples/USER/atc/hardy/in.nvt
examples/USER/atc/hardy/nvt.data
examples/USER/atc/hardy/nvt.screen
examples/USER/atc/mesh/Ar_ttm.mat
examples/USER/atc/mesh/Si.mat
examples/USER/atc/mesh/gaussianIC1d_hex.screen
examples/USER/atc/mesh/gaussianIC2d_hex.screen
examples/USER/atc/mesh/gaussianIC2d_hex20_uniform.screen
examples/USER/atc/mesh/gaussianIC2d_hex27_uniform.screen
examples/USER/atc/mesh/gaussianIC2d_hex_uniform.screen
examples/USER/atc/mesh/gaussianIC2d_tet.screen
examples/USER/atc/mesh/in.gaussianIC1d_hex
examples/USER/atc/mesh/in.gaussianIC2d_hex
examples/USER/atc/mesh/in.gaussianIC2d_hex20_uniform
examples/USER/atc/mesh/in.gaussianIC2d_hex27_uniform
examples/USER/atc/mesh/in.gaussianIC2d_tet
examples/USER/atc/mesh/in.kernel2d_hex
examples/USER/atc/mesh/in.kernel2d_tet
examples/USER/atc/mesh/in.mesh2d_tet
examples/USER/atc/mesh/in.semicircle
examples/USER/atc/mesh/kernel2d_hex.screen
examples/USER/atc/mesh/kernel2d_tet.screen
examples/USER/atc/mesh/mesh2d_tet.screen
examples/USER/atc/mesh/semicircle.screen
examples/USER/atc/molecule/harmonic_bonds.screen
examples/USER/atc/molecule/in.harmonic_bonds
examples/USER/atc/molecule/in.polarize
examples/USER/atc/molecule/in.quartic_bonds
examples/USER/atc/molecule/in.water
examples/USER/atc/molecule/polarize.screen
examples/USER/atc/molecule/quartic_bonds.screen
examples/USER/atc/molecule/water.mat
examples/USER/atc/molecule/water.screen
examples/USER/atc/thermal/Ar_thermal.mat
examples/USER/atc/thermal/bar1d.screen
examples/USER/atc/thermal/bar1d_all_atoms.screen
examples/USER/atc/thermal/bar1d_combined.screen
examples/USER/atc/thermal/bar1d_flux.screen
examples/USER/atc/thermal/bar1d_frac_step.screen
examples/USER/atc/thermal/bar1d_hoover.screen
examples/USER/atc/thermal/bar1d_interpolate.screen
examples/USER/atc/thermal/bar1d_lumped.screen
examples/USER/atc/thermal/in.bar1d
examples/USER/atc/thermal/in.bar1d_all_atoms
examples/USER/atc/thermal/in.bar1d_combined
examples/USER/atc/thermal/in.bar1d_flux
examples/USER/atc/thermal/in.bar1d_frac_step
examples/USER/atc/thermal/in.bar1d_hoover
examples/USER/atc/thermal/in.bar1d_interpolate
examples/USER/atc/thermal/in.bar1d_lumped
examples/USER/atc/thermal/in.no_atoms
examples/USER/atc/thermal/no_atoms.screen
examples/USER/atc/two_temperature/Ar_ttm.mat
examples/USER/atc/two_temperature/Cu_ttm.mat
examples/USER/atc/two_temperature/bar1d_ttm.screen
examples/USER/atc/two_temperature/cutout.screen
examples/USER/atc/two_temperature/gaussianIC_ttm.screen
examples/USER/atc/two_temperature/in.bar1d_ttm
examples/USER/atc/two_temperature/in.cutout
examples/USER/atc/two_temperature/in.gaussianIC_ttm
examples/USER/atc/two_temperature/in.no_atoms
examples/USER/atc/two_temperature/in.restart
examples/USER/atc/two_temperature/in.uniform_exchange
examples/USER/atc/two_temperature/in.uniform_heating
examples/USER/atc/two_temperature/no_atoms.screen
examples/USER/atc/two_temperature/restart.screen
examples/USER/atc/two_temperature/uniform_exchange.screen
examples/USER/atc/two_temperature/uniform_heating.screen
examples/USER/awpmd/H/README
examples/USER/awpmd/H/data.h_atom
examples/USER/awpmd/H/data.h_molecule
examples/USER/awpmd/H/in.h_atom
examples/USER/awpmd/H/in.h_molecule
examples/USER/cg-cmm/README
examples/USER/cg-cmm/peg-verlet/data.pegc12e8.gz
examples/USER/cg-cmm/peg-verlet/in.pegc12e8
examples/USER/cg-cmm/peg-verlet/in.pegc12e8-angle
examples/USER/cg-cmm/peg-verlet/log.pegc12e8
examples/USER/cg-cmm/peg-verlet/log.pegc12e8-angle
examples/USER/cg-cmm/sds-monolayer/data.sds.gz
examples/USER/cg-cmm/sds-monolayer/in.sds-hybrid
examples/USER/cg-cmm/sds-monolayer/in.sds-regular
examples/USER/cg-cmm/sds-monolayer/log.sds-hybrid
examples/USER/cg-cmm/sds-monolayer/log.sds-regular
examples/USER/cgdna/README
examples/USER/cgdna/util/generate.py
examples/USER/cgdna/util/generate_simple.py
examples/USER/cgdna/util/input.ref
examples/USER/cgdna/util/sequence.txt
examples/USER/cgdna/util/sequence_simple.txt
examples/USER/colvars/data.peptide
examples/USER/colvars/in.peptide-colvars
examples/USER/colvars/in.peptide-colvars2
examples/USER/colvars/in.peptide-spring
examples/USER/colvars/in.peptide-spring2
examples/USER/colvars/log.peptide-colvars
examples/USER/colvars/log.peptide-colvars-1
examples/USER/colvars/log.peptide-colvars-4
examples/USER/colvars/log.peptide-colvars2
examples/USER/colvars/log.peptide-colvars2-1
examples/USER/colvars/log.peptide-colvars2-4
examples/USER/colvars/log.peptide-spring
examples/USER/colvars/log.peptide-spring2
examples/USER/colvars/out.colvars.state
examples/USER/colvars/out.colvars.traj
examples/USER/colvars/out2.colvars.state
examples/USER/colvars/out2.colvars.traj
examples/USER/colvars/peptide.colvars
examples/USER/colvars/peptide.colvars2
examples/USER/colvars/peptide.psf
examples/USER/colvars/peptide2.colvars.state
examples/USER/colvars/peptide2.colvars.traj
examples/USER/diffraction/BulkNi.in
examples/USER/diffraction/Output/BulkNi.in
examples/USER/diffraction/Output/bulkNi.hist.xrd.correct
examples/USER/diffraction/Output/bulkNi.log.correct
examples/USER/diffraction/Output/bulkNi_001.saed.0.vtk.correct
examples/USER/diffraction/Output/bulkNi_001.saed.0_VisIt_Image.png
examples/USER/diffraction/Output/log.cite
examples/USER/diffraction/README
examples/USER/dpd/README
examples/USER/dpd/dpd-shardlow/data.dpd
examples/USER/dpd/dpd-shardlow/in.dpd-shardlow
examples/USER/dpd/dpd-shardlow/log.dpd-shardlow.reference
examples/USER/dpd/dpd-vv/data.dpd
examples/USER/dpd/dpd-vv/in.dpd-vv
examples/USER/dpd/dpd-vv/log.dpd-vv.reference
examples/USER/dpd/dpde-shardlow/data.dpde
examples/USER/dpd/dpde-shardlow/in.dpde-shardlow
examples/USER/dpd/dpde-shardlow/log.dpde-shardlow.reference
examples/USER/dpd/dpde-vv/data.dpd
examples/USER/dpd/dpde-vv/in.dpde-vv
examples/USER/dpd/dpde-vv/log.dpde-vv.reference
examples/USER/dpd/dpdh-shardlow/data.dpdh
examples/USER/dpd/dpdh-shardlow/in.dpdh-shardlow
examples/USER/dpd/dpdh-shardlow/log.dpdh-shardlow.reference
examples/USER/dpd/dpdp-shardlow/data.dpd
examples/USER/dpd/dpdp-shardlow/in.dpdp-shardlow
examples/USER/dpd/dpdp-shardlow/log.dpdp-shardlow.reference
examples/USER/dpd/dpdrx-shardlow/in.dpdrx-shardlow
examples/USER/dpd/dpdrx-shardlow/kinetics.dpdrx
examples/USER/dpd/dpdrx-shardlow/log.dpdrx-shardlow.reference
examples/USER/dpd/dpdrx-shardlow/params.exp6
examples/USER/dpd/dpdrx-shardlow/table.eos
examples/USER/dpd/dpdrx-shardlow/thermo.dpdrx
examples/USER/dpd/dpdrx-shardlow/thermo.dpdrx.new
examples/USER/dpd/multi-lucy/in.multi-lucy
examples/USER/dpd/multi-lucy/log.multi-lucy.reference
examples/USER/dpd/multi-lucy/table.multibody
examples/USER/drude/README
examples/USER/drude/butane/data.butane
examples/USER/drude/butane/in.butane.lang
examples/USER/drude/butane/in.butane.nh
examples/USER/drude/butane/log.butane.lang.18Jul15.linux.1
examples/USER/drude/butane/log.butane.lang.18Jul15.linux.4
examples/USER/drude/butane/log.butane.nh.18Jul15.linux.3
examples/USER/drude/butane/log.butane.nh.18Jul15.linux.4
examples/USER/drude/ethanol/data.ethanol
examples/USER/drude/ethanol/in.ethanol.lang
examples/USER/drude/ethanol/in.ethanol.nh
examples/USER/drude/ethanol/log.ethanol.lang.8Jul15.linux.1
examples/USER/drude/ethanol/log.ethanol.lang.8Jul15.linux.4
examples/USER/drude/ethanol/log.ethanol.nh.8Jul15.linux.1
examples/USER/drude/ethanol/log.ethanol.nh.8Jul15.linux.4
examples/USER/drude/swm4-ndp/data.swm4-ndp
examples/USER/drude/swm4-ndp/in.swm4-ndp.lang
examples/USER/drude/swm4-ndp/in.swm4-ndp.nh
examples/USER/drude/swm4-ndp/log.swm4-ndp.lang.8Jul15.linux.1
examples/USER/drude/swm4-ndp/log.swm4-ndp.lang.8Jul15.linux.4
examples/USER/drude/swm4-ndp/log.swm4-ndp.nh.8Jul15.linux.1
examples/USER/drude/swm4-ndp/log.swm4-ndp.nh.8Jul15.linux.4
examples/USER/eff/Auger-Adamantane/README
examples/USER/eff/Auger-Adamantane/data.adamantane
examples/USER/eff/Auger-Adamantane/data.adamantane_ionized
examples/USER/eff/Auger-Adamantane/in.adamantane_ionized.nve
examples/USER/eff/Be-solid/README
examples/USER/eff/Be-solid/data.Be-solid
examples/USER/eff/Be-solid/in.Be-solid.spe
examples/USER/eff/CH4/README
examples/USER/eff/CH4/data.ch4
examples/USER/eff/CH4/data.ch4_ionized
examples/USER/eff/CH4/in.ch4.dynamics
examples/USER/eff/CH4/in.ch4.min
examples/USER/eff/CH4/in.ch4_ionized.dynamics
examples/USER/eff/ECP/README
examples/USER/eff/ECP/Si2H6/data.Si2H6
examples/USER/eff/ECP/Si2H6/data.Si2H6.ang
examples/USER/eff/ECP/Si2H6/in.Si2H6
examples/USER/eff/ECP/Si2H6/in.Si2H6.ang
examples/USER/eff/ECP/SiC/bulk/data.SiC
examples/USER/eff/ECP/SiC/bulk/in.SiC
examples/USER/eff/ECP/SiH4/data.SiH4
examples/USER/eff/ECP/SiH4/data.SiH4.ang
examples/USER/eff/ECP/SiH4/in.SiH4
examples/USER/eff/ECP/SiH4/in.SiH4.ang
examples/USER/eff/H/README
examples/USER/eff/H/data.h_atom.ang
examples/USER/eff/H/data.h_atom.bohr
examples/USER/eff/H/in.h_atom.spe.ang
examples/USER/eff/H/in.h_atom.spe.bohr
examples/USER/eff/H2/README
examples/USER/eff/H2/data.h2
examples/USER/eff/H2/in.h2
examples/USER/eff/H_plasma/README
examples/USER/eff/H_plasma/data.h2bulk
examples/USER/eff/H_plasma/data.h2bulk.ang
examples/USER/eff/H_plasma/in.h2bulk.npt
examples/USER/eff/H_plasma/in.h2bulk.nve
examples/USER/eff/H_plasma/in.h2bulk.nve.ang
examples/USER/eff/Li-dendritic/README
examples/USER/eff/Li-dendritic/data.Li-dendritic
examples/USER/eff/Li-dendritic/in.Li-dendritic.min
examples/USER/eff/Li-dendritic/in.Li-dendritic.nvt
examples/USER/eff/Li-solid/README
examples/USER/eff/Li-solid/data.Li.ang
examples/USER/eff/Li-solid/data.Li.bohr
examples/USER/eff/Li-solid/in.Li.ang
examples/USER/eff/Li-solid/in.Li.bohr
examples/USER/eff/README
examples/USER/eff/fixed-core/C2H6/data.C2H6fc.ang
examples/USER/eff/fixed-core/C2H6/data.C2H6fc.bohr
examples/USER/eff/fixed-core/C2H6/in.C2H6fc.ang
examples/USER/eff/fixed-core/C2H6/in.C2H6fc.bohr
examples/USER/eff/fixed-core/CH4/data.CH4fc.ang
examples/USER/eff/fixed-core/CH4/data.CH4fc.bohr
examples/USER/eff/fixed-core/CH4/in.CH4fc.ang
examples/USER/eff/fixed-core/CH4/in.CH4fc.bohr
examples/USER/eff/fixed-core/CH4/in.CH4fc.spe.ang
examples/USER/eff/fixed-core/CH4/in.CH4fc.spe.bohr
examples/USER/eff/fixed-core/README
examples/USER/fep/CC-CO/README
examples/USER/fep/CC-CO/bar01/bar01.lmp
examples/USER/fep/CC-CO/bar01/in.bar01.lmp
examples/USER/fep/CC-CO/bar01/log.lammps
examples/USER/fep/CC-CO/bar10/bar10.lmp
examples/USER/fep/CC-CO/bar10/in.bar10.lmp
examples/USER/fep/CC-CO/bar10/log.lammps
examples/USER/fep/CC-CO/fdti01/fdti01.lmp
examples/USER/fep/CC-CO/fdti01/in.fdti01.lmp
examples/USER/fep/CC-CO/fdti01/log.lammps
examples/USER/fep/CC-CO/fdti10/fdti10.lmp
examples/USER/fep/CC-CO/fdti10/in.fdti10.lmp
examples/USER/fep/CC-CO/fdti10/log.lammps
examples/USER/fep/CC-CO/fep01/data.0.lmp
examples/USER/fep/CC-CO/fep01/fep01.lmp
examples/USER/fep/CC-CO/fep01/in.fep01
examples/USER/fep/CC-CO/fep01/in.fep01.lmp
examples/USER/fep/CC-CO/fep01/log.lammps
examples/USER/fep/CC-CO/fep01/log.reference
examples/USER/fep/CC-CO/fep01/log.reference-omp
examples/USER/fep/CC-CO/fep10/fep10.lmp
examples/USER/fep/CC-CO/fep10/in.fep10.lmp
examples/USER/fep/CC-CO/fep10/log.lammps
examples/USER/fep/CC-CO/mols/CC-CO.ff
examples/USER/fep/CC-CO/mols/CC-CO.zmat
examples/USER/fep/CC-CO/mols/CO-CC.zmat
examples/USER/fep/CC-CO/mols/README
examples/USER/fep/CC-CO/mols/data.0.lmp
examples/USER/fep/CC-CO/mols/data.1.lmp
examples/USER/fep/CC-CO/mols/spce.ff
examples/USER/fep/CC-CO/mols/spce.zmat
examples/USER/fep/CH4-CF4/README
examples/USER/fep/CH4-CF4/bar01/bar01.lmp
examples/USER/fep/CH4-CF4/bar01/in.bar01.lmp
examples/USER/fep/CH4-CF4/bar01/log.lammps
examples/USER/fep/CH4-CF4/bar10/bar10.lmp
examples/USER/fep/CH4-CF4/bar10/in.bar10.lmp
examples/USER/fep/CH4-CF4/bar10/log.lammps
examples/USER/fep/CH4-CF4/mols/CF4-CH4.zmat
examples/USER/fep/CH4-CF4/mols/CH4-CF4.ff
examples/USER/fep/CH4-CF4/mols/CH4-CF4.zmat
examples/USER/fep/CH4-CF4/mols/data.0.lmp
examples/USER/fep/CH4-CF4/mols/data.1.lmp
examples/USER/fep/CH4-CF4/mols/spce.ff
examples/USER/fep/CH4-CF4/mols/spce.zmat
examples/USER/fep/CH4hyd/README
examples/USER/fep/CH4hyd/fdti01/fdti01.lmp
examples/USER/fep/CH4hyd/fdti01/in.fdti01.lmp
examples/USER/fep/CH4hyd/fdti01/log.lammps
examples/USER/fep/CH4hyd/fdti10/fdti10.lmp
examples/USER/fep/CH4hyd/fdti10/in.fdti10.lmp
examples/USER/fep/CH4hyd/fdti10/log.lammps
examples/USER/fep/CH4hyd/fep01/fep01.lmp
examples/USER/fep/CH4hyd/fep01/in.fep01.lmp
examples/USER/fep/CH4hyd/fep01/log.lammps
examples/USER/fep/CH4hyd/fep10/fep10.lmp
examples/USER/fep/CH4hyd/fep10/in.fep10.lmp
examples/USER/fep/CH4hyd/fep10/log.lammps
examples/USER/fep/CH4hyd/mols/data.lmp
examples/USER/fep/CH4hyd/mols/methane.zmat
examples/USER/fep/CH4hyd/mols/oplsaa.ff
examples/USER/fep/CH4hyd/mols/tip4pew.ff
examples/USER/fep/CH4hyd/mols/tip4pew.zmat
examples/USER/fep/README
examples/USER/flow_gauss/README
examples/USER/flow_gauss/in.GD
examples/USER/lb/confined_colloid/in.confined_colloids
examples/USER/lb/confined_colloid/results64.out
examples/USER/lb/dragforce/data.one_radius16d2
examples/USER/lb/dragforce/defaultgamma_drag.out
examples/USER/lb/dragforce/in.defaultgamma_drag
examples/USER/lb/dragforce/in.setgamma_drag
examples/USER/lb/dragforce/setgamma13d0_drag.out
examples/USER/lb/fourspheres/data.four
examples/USER/lb/fourspheres/fourspheres_velocity0d0001_defaultgamma.out
examples/USER/lb/fourspheres/fourspheres_velocity0d0001_setgamma.out
examples/USER/lb/fourspheres/in.fourspheres_default_gamma
examples/USER/lb/fourspheres/in.fourspheres_set_gamma
examples/USER/lb/microrheology/data.two
examples/USER/lb/microrheology/in.microrheology_default_gamma
examples/USER/lb/microrheology/in.microrheology_set_gamma
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examples/USER/lb/planewall/data.one_radius16d2
examples/USER/lb/planewall/in.planewall_default_gamma
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examples/USER/lb/planewall/wall_defaultgamma.out
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examples/USER/lb/polymer/data.polymer
examples/USER/lb/polymer/in.polymer_default_gamma
examples/USER/lb/polymer/in.polymer_setgamma
examples/USER/lb/polymer/out.polymer_default_gamma
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examples/USER/manifold/diffusion/README
examples/USER/manifold/diffusion/msd.cyl.data
examples/USER/manifold/diffusion/msd.cyl.in
examples/USER/manifold/diffusion/msd.pdf
examples/USER/manifold/diffusion/msd.plane.data
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examples/USER/manifold/diffusion/msd.sphere.data
examples/USER/manifold/diffusion/msd.sphere.in
examples/USER/manifold/diffusion/msd_plot2.pdf
examples/USER/manifold/diffusion/plot_msd.gpl
examples/USER/manifold/energy/README
examples/USER/manifold/energy/cylinder.data
examples/USER/manifold/energy/cylinder.setup
examples/USER/manifold/energy/energy.in
examples/USER/manifold/energy/energy.plane.in
examples/USER/manifold/energy/energy.sh
examples/USER/manifold/energy/energy_conservation.pdf
examples/USER/manifold/energy/energy_conservation.png
examples/USER/manifold/energy/plane.anneal.data
examples/USER/manifold/energy/plane.data
examples/USER/manifold/energy/plot_energies.gpl
examples/USER/manifold/energy/sphere.data
examples/USER/manifold/energy/sphere.setup
examples/USER/manifold/energy/torus.data
examples/USER/manifold/energy/torus.setup
examples/USER/manifold/thylakoid/README
examples/USER/manifold/thylakoid/thylakoid.data
examples/USER/manifold/thylakoid/thylakoid.in
examples/USER/manifold/virus/README
examples/USER/manifold/virus/init.data
examples/USER/manifold/virus/vir.in
examples/USER/mgpt/Ta6.8x.mgpt.README
examples/USER/mgpt/Ta6.8x.mgpt.parmin
examples/USER/mgpt/Ta6.8x.mgpt.potin
examples/USER/mgpt/in.bcc0
examples/USER/mgpt/in.vac0-bcc
examples/USER/mgpt/in.vacmin-bcc
examples/USER/mgpt/log.bcc0
examples/USER/mgpt/log.lammps
examples/USER/mgpt/log.vac0-bcc
examples/USER/mgpt/log.vacmin-bcc
examples/USER/misc/addtorque/in.addtorque
examples/USER/misc/addtorque/log.9Nov16.addtorque.g++.1
examples/USER/misc/addtorque/log.9Nov16.addtorque.g++.4
examples/USER/misc/agni/Al_jpc.agni
examples/USER/misc/agni/adatom.data
examples/USER/misc/agni/in.adatom
examples/USER/misc/agni/in.vacancy
examples/USER/misc/agni/log.21Feb17.adatom.g++.1
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examples/USER/misc/agni/log.21Feb17.vacancy.g++.1
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examples/USER/misc/agni/vacancy.data
examples/USER/misc/basal/almg.liu
examples/USER/misc/basal/in.basal
examples/USER/misc/filter-corotate/data.bpti
examples/USER/misc/filter-corotate/data.peptide
examples/USER/misc/filter-corotate/in.bpti
examples/USER/misc/filter-corotate/in.peptide
examples/USER/misc/filter-corotate/log.10Mar2017.bpti.g++.1
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examples/USER/misc/filter-corotate/log.10Mar2017.peptide.g++.1
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examples/USER/misc/gauss-diel/data.gauss-diel
examples/USER/misc/gauss-diel/in.gauss-diel
examples/USER/misc/gauss-diel/in.gauss-diel-cg
examples/USER/misc/gauss-diel/in.gauss-diel-split
examples/USER/misc/gauss-diel/log.gauss-diel
examples/USER/misc/gauss-diel/log.gauss-diel-cg
examples/USER/misc/gauss-diel/log.gauss-diel-split
examples/USER/misc/gle/data.h2o-quantum
examples/USER/misc/gle/data.h2o-smart
examples/USER/misc/gle/in.h2o-quantum
examples/USER/misc/gle/in.h2o-smart
examples/USER/misc/gle/log.h2o-quantum
examples/USER/misc/gle/log.h2o-smart
examples/USER/misc/gle/qt-300k.A
examples/USER/misc/gle/qt-300k.C
examples/USER/misc/gle/smart.A
examples/USER/misc/grem/README
examples/USER/misc/grem/lj-6rep/400/restart.init
examples/USER/misc/grem/lj-6rep/405/restart.init
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examples/USER/misc/grem/lj-6rep/clean.sh
examples/USER/misc/grem/lj-6rep/double-re-short.py
examples/USER/misc/grem/lj-6rep/in.gREM
examples/USER/misc/grem/lj-6rep/run.sh
examples/USER/misc/grem/lj-6rep/walker.bkp
examples/USER/misc/grem/lj-single/in.gREM-npt
examples/USER/misc/grem/lj-single/in.gREM-nvt
examples/USER/misc/grem/lj-single/lj.data
examples/USER/misc/grem/lj-single/log.gREM-npt.9Nov16.g++.1
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examples/USER/misc/grem/lj-single/log.gREM-nvt.9Nov16.g++.1
examples/USER/misc/grem/lj-single/log.gREM-nvt.9Nov16.g++.4
examples/USER/misc/grem/lj-temper/0/lj.data
examples/USER/misc/grem/lj-temper/0/log.lammps.0
examples/USER/misc/grem/lj-temper/1/lj.data
examples/USER/misc/grem/lj-temper/1/log.lammps.1
examples/USER/misc/grem/lj-temper/2/lj.data
examples/USER/misc/grem/lj-temper/2/log.lammps.2
examples/USER/misc/grem/lj-temper/3/lj.data
examples/USER/misc/grem/lj-temper/3/log.lammps.3
examples/USER/misc/grem/lj-temper/in.gREM-temper
examples/USER/misc/i-pi/C.opt.tersoff
examples/USER/misc/i-pi/README
examples/USER/misc/i-pi/data.graphene
examples/USER/misc/i-pi/i-pi_input.xml
examples/USER/misc/i-pi/i-pi_positions.xyz
examples/USER/misc/i-pi/in.graphene
examples/USER/misc/imd/README
examples/USER/misc/imd/bucky-plus-cnt-mol.psf
examples/USER/misc/imd/bucky_cnt_imd.vmd
examples/USER/misc/imd/data.bucky-plus-cnt
examples/USER/misc/imd/data.deca-ala-solv
examples/USER/misc/imd/deca-ala-solv.psf
examples/USER/misc/imd/deca-ala-solv_imd-demo.vmd
examples/USER/misc/imd/deca-ala.psf
examples/USER/misc/imd/deca-ala_imd-demo.vmd
examples/USER/misc/imd/falcon.tcl
examples/USER/misc/imd/in.bucky-plus-cnt
examples/USER/misc/imd/in.bucky-plus-cnt-gpu
examples/USER/misc/imd/in.deca-ala-solv-filter_imd
examples/USER/misc/imd/in.deca-ala-solv_imd
examples/USER/misc/imd/in.deca-ala_imd
examples/USER/misc/imd/in.deca-ala_imd-gpu
examples/USER/misc/imd/in.melt_imd
examples/USER/misc/imd/in.melt_imd-gpu
examples/USER/misc/imd/melt.psf
examples/USER/misc/imd/melt_imd-demo.vmd
examples/USER/misc/kolmogorov-crespi/data.bilayer-graphene
examples/USER/misc/kolmogorov-crespi/data.graphene-adsorbant
examples/USER/misc/kolmogorov-crespi/in.atom-diffusion
examples/USER/misc/kolmogorov-crespi/in.bilayer-graphene
examples/USER/misc/kolmogorov-crespi/log.atom-diffusion
examples/USER/misc/kolmogorov-crespi/log.bilayer-graphene
examples/USER/misc/meam_sw_spline/Si/bcc.in
examples/USER/misc/meam_sw_spline/Si/bcc_relax.in
examples/USER/misc/meam_sw_spline/Si/dc.in
examples/USER/misc/meam_sw_spline/Si/dc_relax.in
examples/USER/misc/meam_sw_spline/Si/energy_conservation.meam.sw.in
examples/USER/misc/meam_sw_spline/Si/fcc.in
examples/USER/misc/meam_sw_spline/Si/fcc_relax.in
examples/USER/misc/meam_sw_spline/Si/hcp_relax.in
examples/USER/misc/meam_sw_spline/Si/sc.in
examples/USER/misc/meam_sw_spline/Si/sc_relax.in
examples/USER/misc/meam_sw_spline/Si/single_atom.in
examples/USER/misc/meam_sw_spline/Ti/alpha.in
examples/USER/misc/meam_sw_spline/Ti/alpha_relaxation.in
examples/USER/misc/meam_sw_spline/Ti/beta.in
examples/USER/misc/meam_sw_spline/Ti/energy_conservation.meam.sw.in
examples/USER/misc/meam_sw_spline/Ti/fcc.in
examples/USER/misc/meam_sw_spline/Ti/hexagonal.in
examples/USER/misc/meam_sw_spline/Ti/omega.in
examples/USER/misc/meam_sw_spline/Ti/single_atom.in
examples/USER/misc/momb/Ag_O1X5.5_O2X0.55.eam.fs
examples/USER/misc/momb/README
examples/USER/misc/momb/in.system
examples/USER/misc/momb/log.17Mar2017.system.g++.1
examples/USER/misc/momb/log.17Mar2017.system.g++.4
examples/USER/misc/momb/system.data
examples/USER/misc/pimd/para-h2/H2.data
examples/USER/misc/pimd/para-h2/H2.xyz
examples/USER/misc/pimd/para-h2/NM.info
examples/USER/misc/pimd/para-h2/in.scp
examples/USER/misc/pimd/para-h2/pair.table
examples/USER/misc/pimd/para-h2/run.sh
examples/USER/misc/pimd/para-h2/vmd.src
examples/USER/misc/pimd/prot-hairpin/in.scp
examples/USER/misc/pimd/prot-hairpin/run.sh
examples/USER/misc/pimd/prot-hairpin/system.data
examples/USER/misc/srp/data.chain
examples/USER/misc/srp/in.srp
examples/USER/misc/ti/in.ti_spring
examples/USER/phonon/1-1D-mono/README
examples/USER/phonon/1-1D-mono/data.pos
examples/USER/phonon/1-1D-mono/disp.dat
examples/USER/phonon/1-1D-mono/in.Ana
examples/USER/phonon/1-1D-mono/in.disp
examples/USER/phonon/1-1D-mono/log.lammps
examples/USER/phonon/1-1D-mono/map.in
examples/USER/phonon/1-1D-mono/pdisp.eps
examples/USER/phonon/1-1D-mono/pdisp.gnuplot
examples/USER/phonon/1-1D-mono/phonon.bin.2000000
examples/USER/phonon/1-1D-mono/phonon.log
examples/USER/phonon/1-1D-mono/plot.disp
examples/USER/phonon/2-1D-diatomic/README
examples/USER/phonon/2-1D-diatomic/data.pos
examples/USER/phonon/2-1D-diatomic/disp.dat
examples/USER/phonon/2-1D-diatomic/in.Ana
examples/USER/phonon/2-1D-diatomic/in.disp
examples/USER/phonon/2-1D-diatomic/log.lammps
examples/USER/phonon/2-1D-diatomic/map.in
examples/USER/phonon/2-1D-diatomic/pdisp.eps
examples/USER/phonon/2-1D-diatomic/pdisp.gnuplot
examples/USER/phonon/2-1D-diatomic/phonon.bin.2000000
examples/USER/phonon/2-1D-diatomic/phonon.log
examples/USER/phonon/2-1D-diatomic/plot.disp
examples/USER/phonon/3-3D-FCC-Cu-EAM/CuPhonon.bin.6500000
examples/USER/phonon/3-3D-FCC-Cu-EAM/CuPhonon.log
examples/USER/phonon/3-3D-FCC-Cu-EAM/README
examples/USER/phonon/3-3D-FCC-Cu-EAM/cuu3.eam
examples/USER/phonon/3-3D-FCC-Cu-EAM/data.pos
examples/USER/phonon/3-3D-FCC-Cu-EAM/disp-expr.dat
examples/USER/phonon/3-3D-FCC-Cu-EAM/disp-ld.dat
examples/USER/phonon/3-3D-FCC-Cu-EAM/disp.dat
examples/USER/phonon/3-3D-FCC-Cu-EAM/dos-expr.dat
examples/USER/phonon/3-3D-FCC-Cu-EAM/dos-ld.dat
examples/USER/phonon/3-3D-FCC-Cu-EAM/dos.dat
examples/USER/phonon/3-3D-FCC-Cu-EAM/in.EAM3D
examples/USER/phonon/3-3D-FCC-Cu-EAM/in.disp
examples/USER/phonon/3-3D-FCC-Cu-EAM/in.disp2
examples/USER/phonon/3-3D-FCC-Cu-EAM/in.dos
examples/USER/phonon/3-3D-FCC-Cu-EAM/map.in
examples/USER/phonon/3-3D-FCC-Cu-EAM/pdisp.eps
examples/USER/phonon/3-3D-FCC-Cu-EAM/pdisp.gnuplot
examples/USER/phonon/3-3D-FCC-Cu-EAM/pdos.eps
examples/USER/phonon/3-3D-FCC-Cu-EAM/plot.disp
examples/USER/phonon/3-3D-FCC-Cu-EAM/plot.dos
examples/USER/phonon/4-Graphene/Graphene.bin.6000000
examples/USER/phonon/4-Graphene/Graphene.log
examples/USER/phonon/4-Graphene/README
examples/USER/phonon/4-Graphene/SiC.tersoff
examples/USER/phonon/4-Graphene/data.pos
examples/USER/phonon/4-Graphene/in.disp
examples/USER/phonon/4-Graphene/in.graphene
examples/USER/phonon/4-Graphene/map.in
examples/USER/phonon/4-Graphene/pdisp.dat
examples/USER/phonon/4-Graphene/pdisp.eps
examples/USER/phonon/4-Graphene/pdisp.gnuplot
examples/USER/phonon/4-Graphene/plot.disp
examples/USER/qtb/README
examples/USER/qtb/alpha_quartz_qbmsst/alpha_quartz_potential.mod
examples/USER/qtb/alpha_quartz_qbmsst/alpha_quartz_qbmsst.in
examples/USER/qtb/alpha_quartz_qbmsst/alpha_quartz_qtb.mod
examples/USER/qtb/alpha_quartz_qbmsst/potential_SiO2.TPF
examples/USER/qtb/alpha_quartz_qtb/alpha_quartz_qtb.in
examples/USER/qtb/methane_qbmsst/ffield.reax
examples/USER/qtb/methane_qbmsst/methane_qbmsst.in
examples/USER/qtb/methane_qbmsst/methane_qtb.mod
examples/USER/qtb/methane_qtb/ffield.reax
examples/USER/qtb/methane_qtb/methane_qtb.in
examples/USER/quip/data_gap
examples/USER/quip/data_sw
examples/USER/quip/gap_example.xml
examples/USER/quip/gap_example_sparse.dat
examples/USER/quip/in.gap
examples/USER/quip/in.sw
examples/USER/quip/sw_example.xml
examples/USER/smd/README
examples/USER/smd/aluminum_strip_pull/aluminum_strip_pull.lmp
examples/USER/smd/fluid_structure_interaction/fluid_structure_interaction.lmp
examples/USER/smd/funnel_flow/boundary.stl
examples/USER/smd/funnel_flow/funnel_flow.lmp
examples/USER/smd/rubber_rings_3d/rubber_rings_3d.lmp
examples/USER/smd/rubber_rings_3d/washer_hex_adjusted.data
examples/USER/smd/rubber_strip_pull/plot.gpl
examples/USER/smd/rubber_strip_pull/rubber_strip_pull.lmp
examples/USER/smtbq/data.Alpha
examples/USER/smtbq/ffield.smtbq.Al
examples/USER/smtbq/ffield.smtbq.Al2O3
examples/USER/smtbq/ffield.smtbq.TiO2
examples/USER/smtbq/in.smtbq.Al
examples/USER/smtbq/in.smtbq.Al2O3
examples/USER/smtbq/in.smtbq.TiO2
examples/USER/smtbq/log.smtbq.Al.g++.1
examples/USER/smtbq/log.smtbq.Al.g++.4
examples/USER/smtbq/log.smtbq.Al2O3.g++.1
examples/USER/smtbq/log.smtbq.Al2O3.g++.4
examples/USER/smtbq/log.smtbq.TiO2.g++.1
examples/USER/smtbq/log.smtbq.TiO2.g++.4
examples/USER/sph/README
examples/USER/sph/cavity_flow/cavity_flow.lmp
examples/USER/sph/heatconduction/compare_analytic.gpl
examples/USER/sph/heatconduction/sph_heat_conduction_2d.lmp
examples/USER/sph/heatconduction/sph_heat_conduction_3d.lmp
examples/USER/sph/shock_tube/compare_exact.gpl
examples/USER/sph/shock_tube/exact_solution.dat
examples/USER/sph/shock_tube/shock2d.lmp
examples/USER/sph/shock_tube/shock3d.lmp
examples/USER/sph/water_collapse/data.initial
examples/USER/sph/water_collapse/water_collapse.lmp
examples/USER/tally/README
examples/USER/tally/data.spce
examples/USER/tally/in.force
examples/USER/tally/in.pe
examples/USER/tally/in.stress
examples/USER/tally/log.21Aug15.force.1
examples/USER/tally/log.21Aug15.force.4
examples/USER/tally/log.21Aug15.pe.1
examples/USER/tally/log.21Aug15.pe.4
examples/USER/tally/log.21Aug15.stress.1
examples/USER/tally/log.21Aug15.stress.4
examples/VISCOSITY/README
examples/VISCOSITY/in.einstein.2d
examples/VISCOSITY/in.gk.2d
examples/VISCOSITY/in.mp.2d
examples/VISCOSITY/in.nemd.2d
examples/VISCOSITY/in.wall.2d
examples/VISCOSITY/log.13Oct16.einstein.2d.g++.1
examples/VISCOSITY/log.13Oct16.gk.2d.g++.1
examples/VISCOSITY/log.13Oct16.mp.2d.g++.1
examples/VISCOSITY/log.13Oct16.nemd.2d.g++.1
examples/VISCOSITY/log.13Oct16.wall.2d.g++.1
examples/VISCOSITY/profile.13Oct16.einstein.2d.g++.1
examples/VISCOSITY/profile.13Oct16.gk.2d.g++.1
examples/VISCOSITY/profile.13Oct16.mp.2d.g++.1
examples/VISCOSITY/profile.13Oct16.nemd.2d.g++.1
examples/VISCOSITY/profile.13Oct16.wall.2d.g++.1
examples/accelerate/Make.list
examples/accelerate/README
examples/accelerate/data.phosphate
examples/accelerate/in.lc
examples/accelerate/in.lj
examples/accelerate/in.lj.5.0
examples/accelerate/in.phosphate
examples/accelerate/in.rhodo
examples/accelerate/log.lj.1Feb14.gpu.1
examples/accelerate/log.lj.1Feb14.gpu.4
examples/accelerate/log.lj.1Feb14.kokkos.cuda.1
examples/accelerate/log.lj.1Feb14.kokkos.cuda.2
examples/accelerate/log.lj.1Feb14.kokkos.omp.1
examples/accelerate/log.lj.1Feb14.kokkos.omp.4
examples/accelerate/log.lj.5.0.1Feb14.gpu.1
examples/accelerate/log.lj.5.0.1Feb14.gpu.4
examples/accelerate/log.phosphate.1Feb14.gpu.1
examples/accelerate/log.phosphate.1Feb14.gpu.4
examples/accelerate/log.rhodo.1Feb14.gpu.1
examples/accelerate/log.rhodo.1Feb14.gpu.4
examples/balance/in.balance
examples/balance/in.balance.bond.fast
examples/balance/in.balance.bond.slow
examples/balance/in.balance.clock.dynamic
examples/balance/in.balance.clock.static
examples/balance/in.balance.group.dynamic
examples/balance/in.balance.group.static
examples/balance/in.balance.kspace
examples/balance/in.balance.neigh.dynamic
examples/balance/in.balance.neigh.rcb
examples/balance/in.balance.neigh.static
examples/balance/in.balance.var.dynamic
examples/balance/log.5Oct16.balance.bond.fast.g++.4
examples/balance/log.5Oct16.balance.bond.slow.g++.4
examples/balance/log.5Oct16.balance.clock.dynamic.g++.4
examples/balance/log.5Oct16.balance.clock.static.g++.4
examples/balance/log.5Oct16.balance.g++.4
examples/balance/log.5Oct16.balance.group.dynamic.g++.4
examples/balance/log.5Oct16.balance.group.static.g++.4
examples/balance/log.5Oct16.balance.kspace.g++.4
examples/balance/log.5Oct16.balance.neigh.dynamic.g++.4
examples/balance/log.5Oct16.balance.neigh.rcb.g++.4
examples/balance/log.5Oct16.balance.neigh.static.g++.4
examples/balance/log.5Oct16.balance.var.dynamic.g++.2
examples/body/data.body
examples/body/in.body
examples/body/log.5Oct16.body.g++.1
examples/body/log.5Oct16.body.g++.4
examples/cmap/charmm22.cmap
examples/cmap/gagg.data
examples/cmap/in.cmap
examples/cmap/log.5Oct16.cmap.g++.1
examples/cmap/log.5Oct16.cmap.g++.4
examples/colloid/in.colloid
examples/colloid/log.5Oct16.colloid.g++.1
examples/colloid/log.5Oct16.colloid.g++.4
examples/comb/README
examples/comb/data.Cu2O
examples/comb/data.CuaS
examples/comb/data.c-HfO2
examples/comb/data.comb3-OHCCu
examples/comb/data.m-HfO2
examples/comb/data.t-HfO2
examples/comb/elastic.f90
examples/comb/ffield.comb
examples/comb/ffield.comb3
examples/comb/in.comb.Cu
examples/comb/in.comb.Cu2O.elastic
examples/comb/in.comb.HfO2
examples/comb/in.comb.Si
examples/comb/in.comb.Si.elastic
examples/comb/in.comb3
examples/comb/lib.comb3
examples/comb/log.5Oct16.comb.Cu.g++.1
examples/comb/log.5Oct16.comb.Cu.g++.4
examples/comb/log.5Oct16.comb.Cu2O.elastic.g++.1
examples/comb/log.5Oct16.comb.Cu2O.elastic.g++.4
examples/comb/log.5Oct16.comb.HfO2.g++.1
examples/comb/log.5Oct16.comb.HfO2.g++.4
examples/comb/log.5Oct16.comb.Si.elastic.g++.1
examples/comb/log.5Oct16.comb.Si.elastic.g++.4
examples/comb/log.5Oct16.comb.Si.g++.1
examples/comb/log.5Oct16.comb.Si.g++.4
examples/comb/log.5Oct16.comb3.g++.1
examples/comb/log.5Oct16.comb3.g++.4
examples/controller/in.controller
examples/controller/log.5Oct16.controller.g++.1
examples/controller/log.5Oct16.controller.g++.4
examples/coreshell/data.coreshell
examples/coreshell/in.coreshell
examples/coreshell/in.coreshell.dsf
examples/coreshell/in.coreshell.thermostats
examples/coreshell/log.5Oct16.coreshell.g++.1
examples/coreshell/log.5Oct16.coreshell.g++.4
examples/coreshell/log.9Nov16.coreshell.dsf.g++.1
examples/coreshell/log.9Nov16.coreshell.dsf.g++.4
examples/crack/in.crack
examples/crack/log.5Oct16.crack.g++.1
examples/crack/log.5Oct16.crack.g++.4
examples/deposit/in.deposit.atom
examples/deposit/in.deposit.molecule
examples/deposit/in.deposit.molecule.shake
examples/deposit/log.5Oct16.deposit.atom.g++.1
examples/deposit/log.5Oct16.deposit.atom.g++.4
examples/deposit/log.5Oct16.deposit.molecule.g++.1
examples/deposit/log.5Oct16.deposit.molecule.g++.4
examples/deposit/log.5Oct16.deposit.molecule.shake.g++.1
examples/deposit/log.5Oct16.deposit.molecule.shake.g++.4
examples/deposit/molecule.dimer
examples/deposit/molecule.dimer.shake
examples/dipole/in.dipole
examples/dipole/log.5Oct16.dipole.g++.1
examples/dipole/log.5Oct16.dipole.g++.4
examples/dreiding/README
examples/dreiding/ch3oh.box.dreiding.bgf
examples/dreiding/ch3oh.box.dreiding.cerius2.eng.dat
examples/dreiding/data.dreiding
examples/dreiding/in.dreiding
examples/dreiding/log.5Oct16.dreiding.g++.1
examples/dreiding/log.5Oct16.dreiding.g++.4
examples/eim/data.eim
examples/eim/ffield.eim
examples/eim/in.eim
examples/eim/log.5Oct16.eim.g++.1
examples/eim/log.5Oct16.eim.g++.4
examples/ellipse/in.ellipse.gayberne
examples/ellipse/in.ellipse.resquared
examples/ellipse/log.5Oct16.ellipse.gayberne.g++.1
examples/ellipse/log.5Oct16.ellipse.gayberne.g++.4
examples/ellipse/log.5Oct16.ellipse.resquared.g++.1
examples/ellipse/log.5Oct16.ellipse.resquared.g++.4
examples/flow/in.flow.couette
examples/flow/in.flow.pois
examples/flow/log.5Oct16.flow.couette.g++.1
examples/flow/log.5Oct16.flow.couette.g++.4
examples/flow/log.5Oct16.flow.pois.g++.1
examples/flow/log.5Oct16.flow.pois.g++.4
examples/friction/in.friction
examples/friction/log.5Oct16.friction.g++.1
examples/friction/log.5Oct16.friction.g++.4
examples/gcmc/CO2.txt
examples/gcmc/in.gcmc.co2
examples/gcmc/in.gcmc.lj
examples/gcmc/log.24Mar17.gcmc.co2.g++.1
examples/gcmc/log.24Mar17.gcmc.co2.g++.4
examples/gcmc/log.24Mar17.gcmc.lj.g++.1
examples/gcmc/log.24Mar17.gcmc.lj.g++.4
examples/granregion/in.granregion.box
examples/granregion/in.granregion.funnel
examples/granregion/in.granregion.mixer
examples/granregion/log.6Oct16.granregion.box.g++.1
examples/granregion/log.6Oct16.granregion.box.g++.4
examples/granregion/log.6Oct16.granregion.funnel.g++.1
examples/granregion/log.6Oct16.granregion.funnel.g++.4
examples/granregion/log.6Oct16.granregion.mixer.g++.1
examples/granregion/log.6Oct16.granregion.mixer.g++.4
examples/hugoniostat/in.hugoniostat
examples/hugoniostat/log.5Oct16.hugoniostat.g++.1
examples/hugoniostat/log.5Oct16.hugoniostat.g++.4
examples/indent/in.indent
examples/indent/in.indent.min
examples/indent/log.5Oct16.indent.g++.1
examples/indent/log.5Oct16.indent.g++.4
examples/indent/log.5Oct16.indent.min.g++.1
examples/indent/log.5Oct16.indent.min.g++.4
examples/kim/in.kim.lj
examples/kim/in.kim.lj.lmp
examples/kim/log.28Jun15.kim.lj.lmp.ubuntu.1
examples/kim/log.28Jun15.kim.lj.lmp.ubuntu.4
examples/kim/log.28Jun15.kim.lj.ubuntu.1
examples/kim/log.28Jun15.kim.lj.ubuntu.4
examples/meam/Ni.meam
examples/meam/SiC.meam
examples/meam/data.meam
examples/meam/in.meam
examples/meam/in.meam.shear
examples/meam/library.meam
examples/meam/log.5Oct16.meam.icc.1
examples/meam/log.5Oct16.meam.icc.4
examples/meam/log.5Oct16.meam.shear.icc.1
examples/meam/log.5Oct16.meam.shear.icc.4
examples/melt/in.melt
examples/melt/log.5Oct16.melt.g++.1
examples/melt/log.5Oct16.melt.g++.4
examples/micelle/data.micelle
examples/micelle/def.micelle
examples/micelle/in.micelle
examples/micelle/log.5Oct16.micelle.g++.1
examples/micelle/log.5Oct16.micelle.g++.4
examples/min/in.min
examples/min/in.min.box
examples/min/log.5Oct16.min.box.g++.1
examples/min/log.5Oct16.min.box.g++.4
examples/min/log.5Oct16.min.g++.1
examples/min/log.5Oct16.min.g++.4
examples/mscg/README
examples/mscg/control.in
examples/mscg/data.meoh
examples/mscg/dump.meoh
examples/mscg/in.mscg
examples/mscg/output_9Jan17/1_1.dat
examples/mscg/output_9Jan17/1_1.table
examples/mscg/output_9Jan17/b-spline.out
examples/mscg/output_9Jan17/log.lammps
examples/mscg/output_9Jan17/rmin.in
examples/mscg/output_9Jan17/sol_info.out
examples/mscg/output_9Jan17/x.out
examples/msst/in.msst
examples/msst/log.5Oct16.msst.g++.1
examples/msst/log.5Oct16.msst.g++.4
examples/nb3b/MOH.nb3b.harmonic
examples/nb3b/data.nb3b
examples/nb3b/in.nb3b
examples/nb3b/log.5Oct16.nb3b.g++.1
examples/nb3b/log.5Oct16.nb3b.g++.4
examples/neb/README
examples/neb/Si.sw
examples/neb/final.hop1
examples/neb/final.hop2
examples/neb/final.sivac
examples/neb/in.neb.hop1
examples/neb/in.neb.hop2
examples/neb/in.neb.sivac
examples/neb/initial.hop1
examples/neb/initial.hop2
examples/neb/initial.sivac
examples/neb/log.5Oct16.neb.hop1.g++.4
examples/neb/log.5Oct16.neb.hop1.g++.8
examples/neb/log.5Oct16.neb.hop2.g++.4
examples/neb/log.5Oct16.neb.hop2.g++.8
examples/neb/log.5Oct16.neb.sivac.g++.3
examples/neb/log.5Oct16.neb.sivac.g++.6
examples/neb/log.5Oct16.neb.sivac.g++.9
examples/nemd/in.nemd
examples/nemd/log.5Oct16.nemd.g++.1
examples/nemd/log.5Oct16.nemd.g++.4
examples/obstacle/in.obstacle
examples/obstacle/log.5Oct16.obstacle.g++.1
examples/obstacle/log.5Oct16.obstacle.g++.4
examples/peptide/README
examples/peptide/data.peptide
examples/peptide/in.peptide
examples/peptide/log.5Oct16.peptide.g++.1
examples/peptide/log.5Oct16.peptide.g++.4
examples/peri/in.peri
examples/peri/log.5Oct16.peri.g++.1
examples/peri/log.5Oct16.peri.g++.4
examples/pour/in.pour
examples/pour/in.pour.2d
examples/pour/in.pour.2d.molecule
examples/pour/log.5Oct16.pour.2d.g++.1
examples/pour/log.5Oct16.pour.2d.g++.4
examples/pour/log.5Oct16.pour.2d.molecule.g++.1
examples/pour/log.5Oct16.pour.2d.molecule.g++.4
examples/pour/log.5Oct16.pour.g++.1
examples/pour/log.5Oct16.pour.g++.4
examples/pour/molecule.vshape
examples/prd/README
examples/prd/Si.sw
examples/prd/in.prd
examples/prd/log.5Oct16.prd.g++.4
examples/prd/log.5Oct16.prd.g++.8
examples/prd/screen.5Oct16.prd.g++.4.0
examples/prd/screen.5Oct16.prd.g++.4.1
examples/prd/screen.5Oct16.prd.g++.4.2
examples/prd/screen.5Oct16.prd.g++.4.3
examples/prd/screen.5Oct16.prd.g++.8.0
examples/prd/screen.5Oct16.prd.g++.8.1
examples/prd/screen.5Oct16.prd.g++.8.2
examples/prd/screen.5Oct16.prd.g++.8.3
examples/python/funcs.py
examples/python/in.python
examples/python/log.5Oct16.python.g++.1
examples/python/log.5Oct16.python.g++.4
examples/qeq/data.CHO
examples/qeq/data.aC
examples/qeq/ffield.reax.cho
examples/qeq/in.qeq.buck
examples/qeq/in.qeq.reaxc
examples/qeq/log.5Oct16.qeq.buck.g++.1
examples/qeq/log.5Oct16.qeq.buck.g++.4
examples/qeq/log.5Oct16.qeq.reaxc.g++.1
examples/qeq/log.5Oct16.qeq.reaxc.g++.4
examples/qeq/param.qeq.reax
examples/qeq/param.qeq1
examples/qeq/param.qeq2
examples/reax/AB/README
examples/reax/AB/data.AB
examples/reax/AB/ffield.reax.AB
examples/reax/AB/in.AB
examples/reax/AB/lmp_control
examples/reax/AB/log.5Oct16.AB.g++.1
examples/reax/AB/log.5Oct16.AB.g++.4
examples/reax/AB/param.qeq
examples/reax/AuO/README
examples/reax/AuO/data.AuO
examples/reax/AuO/ffield.reax.AuO
examples/reax/AuO/in.AuO
examples/reax/AuO/lmp_control
examples/reax/AuO/log.5Oct16.AuO.g++.1
examples/reax/AuO/log.5Oct16.AuO.g++.4
examples/reax/AuO/param.qeq
examples/reax/CHO/README
examples/reax/CHO/data.CHO
examples/reax/CHO/ffield.reax.cho
examples/reax/CHO/in.CHO
examples/reax/CHO/lmp_control
examples/reax/CHO/log.5Oct16.CHO.g++.1
examples/reax/CHO/log.5Oct16.CHO.g++.4
examples/reax/CHO/param.qeq
examples/reax/FC/README
examples/reax/FC/data.FC
examples/reax/FC/ffield.reax.FC
examples/reax/FC/in.FC
examples/reax/FC/log.5Oct16.FC.g++.1
examples/reax/FC/log.5Oct16.FC.g++.4
examples/reax/FeOH3/README
examples/reax/FeOH3/data.FeOH3
examples/reax/FeOH3/ffield.reax.Fe_O_C_H
examples/reax/FeOH3/in.FeOH3
examples/reax/FeOH3/lmp_control
examples/reax/FeOH3/log.5Oct16.FeOH3.g++.1
examples/reax/FeOH3/log.5Oct16.FeOH3.g++.4
examples/reax/FeOH3/param.qeq
examples/reax/RDX/README
examples/reax/RDX/data.RDX
examples/reax/RDX/ffield.reax.rdx
examples/reax/RDX/in.RDX
examples/reax/RDX/lmp_control
examples/reax/RDX/log.5Oct16.RDX.g++.1
examples/reax/RDX/log.5Oct16.RDX.g++.4
examples/reax/RDX/param.qeq
examples/reax/README
examples/reax/VOH/README
examples/reax/VOH/data.VOH
examples/reax/VOH/ffield.reax.V_O_C_H
examples/reax/VOH/in.VOH
examples/reax/VOH/lmp_control
examples/reax/VOH/log.5Oct16.VOH.g++.1
examples/reax/VOH/log.5Oct16.VOH.g++.4
examples/reax/VOH/param.qeq
examples/reax/ZnOH2/README
examples/reax/ZnOH2/data.ZnOH2
examples/reax/ZnOH2/ffield.reax.ZnOH
examples/reax/ZnOH2/in.ZnOH2
examples/reax/ZnOH2/lmp_control
examples/reax/ZnOH2/log.5Oct16.ZnOH2.g++.1
examples/reax/ZnOH2/log.5Oct16.ZnOH2.g++.4
examples/reax/ZnOH2/param.qeq
examples/reax/control.reax_c.rdx
examples/reax/control.reax_c.tatb
examples/reax/data.rdx
examples/reax/data.tatb
examples/reax/ffield.reax
examples/reax/in.reax.rdx
examples/reax/in.reax.tatb
examples/reax/in.reaxc.rdx
examples/reax/in.reaxc.tatb
examples/reax/log.5Oct16.reax.rdx.g++.1
examples/reax/log.5Oct16.reax.rdx.g++.4
examples/reax/log.5Oct16.reax.tatb.g++.1
examples/reax/log.5Oct16.reax.tatb.g++.4
examples/reax/log.5Oct16.reaxc.rdx.g++.1
examples/reax/log.5Oct16.reaxc.rdx.g++.4
examples/reax/log.5Oct16.reaxc.tatb.g++.1
examples/reax/log.5Oct16.reaxc.tatb.g++.4
examples/rigid/data.rigid
examples/rigid/data.rigid.tnr
examples/rigid/in.rigid
examples/rigid/in.rigid.poems
examples/rigid/in.rigid.poems2
examples/rigid/in.rigid.tnr
examples/rigid/log.5Oct16.rigid.g++.1
examples/rigid/log.5Oct16.rigid.g++.4
examples/rigid/log.5Oct16.rigid.poems.g++.1
examples/rigid/log.5Oct16.rigid.poems.g++.4
examples/rigid/log.5Oct16.rigid.poems2.g++.1
examples/rigid/log.5Oct16.rigid.poems2.g++.4
examples/rigid/log.5Oct16.rigid.tnr.g++.1
examples/rigid/log.5Oct16.rigid.tnr.g++.4
examples/shear/Ni_u3.eam
examples/shear/in.shear
examples/shear/in.shear.void
examples/shear/log.5Oct16.shear.g++.1
examples/shear/log.5Oct16.shear.g++.4
examples/shear/log.5Oct16.shear.void.g++.1
examples/shear/log.5Oct16.shear.void.g++.4
examples/snap/He_He_JW2013.table
examples/snap/Ta06A.snap
examples/snap/Ta06A.snapcoeff
examples/snap/Ta06A.snapparam
examples/snap/W_2940_2017_2.snap
examples/snap/W_2940_2017_2.snapcoeff
examples/snap/W_2940_2017_2.snapparam
examples/snap/W_2940_2017_2_He_JW2013.snap
examples/snap/W_He_JW2013.table
examples/snap/in.snap.Ta06A
examples/snap/in.snap.W.2940
examples/snap/in.snap.hybrid.WSNAP.HePair
examples/snap/log.21Feb17.snap.W.2940.g++.1
examples/snap/log.21Feb17.snap.W.2940.g++.4
examples/snap/log.21Feb17.snap.hybrid.WSNAP.HePair.g++.1
examples/snap/log.21Feb17.snap.hybrid.WSNAP.HePair.g++.4
examples/snap/log.5Oct16.snap.Ta06A.g++.1
examples/snap/log.5Oct16.snap.Ta06A.g++.4
examples/srd/in.srd.mixture
examples/srd/in.srd.pure
examples/srd/log.5Oct16.srd.mixture.g++.1
examples/srd/log.5Oct16.srd.mixture.g++.4
examples/srd/log.5Oct16.srd.pure.g++.1
examples/srd/log.5Oct16.srd.pure.g++.4
examples/streitz/AlO.eam.alloy
examples/streitz/AlO.streitz
examples/streitz/data.streitz
examples/streitz/in.streitz.ewald
examples/streitz/in.streitz.wolf
examples/streitz/log.5Oct16.streitz.ewald.g++.1
examples/streitz/log.5Oct16.streitz.ewald.g++.4
examples/streitz/log.5Oct16.streitz.wolf.g++.1
examples/streitz/log.5Oct16.streitz.wolf.g++.4
examples/tad/README
examples/tad/Si.sw
examples/tad/in.tad
examples/tad/log.5Oct16.tad.g++.3
examples/threebody/BNC.tersoff
examples/threebody/CdTeZnSeHgS0.sw
examples/threebody/InP.vashishta
examples/threebody/Si.sw
examples/threebody/in.threebody
examples/vashishta/InP.vashishta
examples/vashishta/SiO.1990.vashishta
examples/vashishta/data.quartz
examples/vashishta/in.vashishta.inp
examples/vashishta/in.vashishta.sio2
examples/vashishta/in.vashishta.table.inp
examples/vashishta/in.vashishta.table.sio2
examples/vashishta/log.5Oct16.indiumphosphide.g++.1
examples/vashishta/log.5Oct16.indiumphosphide.g++.4
examples/vashishta/log.5Oct16.sio2.g++.1
examples/vashishta/log.5Oct16.sio2.g++.4
examples/vashishta/log.5Oct16.vashishta.inp.g++.1
examples/vashishta/log.5Oct16.vashishta.inp.g++.4
examples/vashishta/log.5Oct16.vashishta.sio2.g++.1
examples/vashishta/log.5Oct16.vashishta.sio2.g++.4
examples/vashishta/log.5Oct16.vashishta.table.inp.g++.1
examples/vashishta/log.5Oct16.vashishta.table.inp.g++.4
examples/vashishta/log.5Oct16.vashishta.table.sio2.g++.1
examples/vashishta/log.5Oct16.vashishta.table.sio2.g++.4
examples/voronoi/README
examples/voronoi/in.voronoi
examples/voronoi/in.voronoi.2d
examples/voronoi/in.voronoi.data
examples/voronoi/log.5Oct16.voronoi.2d.g++.1
examples/voronoi/log.5Oct16.voronoi.2d.g++.4
examples/voronoi/log.5Oct16.voronoi.data.g++.1
examples/voronoi/log.5Oct16.voronoi.data.g++.4
examples/voronoi/log.5Oct16.voronoi.g++.1
examples/voronoi/log.5Oct16.voronoi.g++.4
lib/README
lib/atc/ATC_Coupling.cpp
lib/atc/ATC_Coupling.h
lib/atc/ATC_CouplingEnergy.cpp
lib/atc/ATC_CouplingEnergy.h
lib/atc/ATC_CouplingMass.cpp
lib/atc/ATC_CouplingMass.h
lib/atc/ATC_CouplingMomentum.cpp
lib/atc/ATC_CouplingMomentum.h
lib/atc/ATC_CouplingMomentumEnergy.cpp
lib/atc/ATC_CouplingMomentumEnergy.h
lib/atc/ATC_Error.h
lib/atc/ATC_Method.cpp
lib/atc/ATC_Method.h
lib/atc/ATC_Transfer.cpp
lib/atc/ATC_Transfer.h
lib/atc/ATC_TransferKernel.cpp
lib/atc/ATC_TransferKernel.h
lib/atc/ATC_TransferPartitionOfUnity.cpp
lib/atc/ATC_TransferPartitionOfUnity.h
lib/atc/ATC_TypeDefs.h
lib/atc/Array.h
lib/atc/Array2D.h
lib/atc/AtomToMoleculeTransfer.cpp
lib/atc/AtomToMoleculeTransfer.h
lib/atc/AtomicRegulator.cpp
lib/atc/AtomicRegulator.h
lib/atc/BodyForce.cpp
lib/atc/BodyForce.h
lib/atc/CBLattice.cpp
lib/atc/CBLattice.h
lib/atc/CG.h
lib/atc/CauchyBorn.cpp
lib/atc/CauchyBorn.h
lib/atc/CbEam.h
lib/atc/CbLjCut.h
lib/atc/CbLjSmoothLinear.h
lib/atc/CbPotential.cpp
lib/atc/CbPotential.h
lib/atc/ChargeRegulator.cpp
lib/atc/ChargeRegulator.h
lib/atc/CloneVector.h
lib/atc/ConcentrationRegulator.cpp
lib/atc/ConcentrationRegulator.h
lib/atc/DenseMatrix.h
lib/atc/DenseVector.h
lib/atc/DependencyManager.h
lib/atc/DiagonalMatrix.h
lib/atc/DislocationExtractor.h
lib/atc/ElasticTimeIntegrator.cpp
lib/atc/ElasticTimeIntegrator.h
lib/atc/ElectronChargeDensity.cpp
lib/atc/ElectronChargeDensity.h
lib/atc/ElectronDragPower.cpp
lib/atc/ElectronDragPower.h
lib/atc/ElectronFlux.cpp
lib/atc/ElectronFlux.h
lib/atc/ElectronHeatCapacity.cpp
lib/atc/ElectronHeatCapacity.h
lib/atc/ElectronHeatFlux.cpp
lib/atc/ElectronHeatFlux.h
lib/atc/ElectronPhononExchange.cpp
lib/atc/ElectronPhononExchange.h
lib/atc/ExtrinsicModel.cpp
lib/atc/ExtrinsicModel.h
lib/atc/ExtrinsicModelDriftDiffusion.cpp
lib/atc/ExtrinsicModelDriftDiffusion.h
lib/atc/ExtrinsicModelElectrostatic.cpp
lib/atc/ExtrinsicModelElectrostatic.h
lib/atc/ExtrinsicModelTwoTemperature.cpp
lib/atc/ExtrinsicModelTwoTemperature.h
lib/atc/FE_Element.cpp
lib/atc/FE_Element.h
lib/atc/FE_Engine.cpp
lib/atc/FE_Engine.h
lib/atc/FE_Interpolate.cpp
lib/atc/FE_Interpolate.h
lib/atc/FE_Mesh.cpp
lib/atc/FE_Mesh.h
lib/atc/FE_Quadrature.h
lib/atc/FieldEulerIntegrator.cpp
lib/atc/FieldEulerIntegrator.h
lib/atc/FieldManager.cpp
lib/atc/FieldManager.h
lib/atc/Function.cpp
lib/atc/Function.h
lib/atc/FundamentalAtomicQuantity.cpp
lib/atc/FundamentalAtomicQuantity.h
lib/atc/GMRES.h
lib/atc/GhostManager.cpp
lib/atc/GhostManager.h
lib/atc/ImplicitSolveOperator.cpp
lib/atc/ImplicitSolveOperator.h
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lib/kokkos/config/configure_kokkos_dev.sh
lib/kokkos/config/configure_kokkos_nvidia.sh
lib/kokkos/config/configure_shannon.sh
lib/kokkos/config/configure_tpetra_kokkos_cuda_nvcc_wrapper.sh
lib/kokkos/config/kokkos-trilinos-integration-procedure.txt
lib/kokkos/config/kokkos_dev/config-core-all.sh
lib/kokkos/config/kokkos_dev/config-core-cuda-omp-hwloc.sh
lib/kokkos/config/kokkos_dev/config-core-cuda.sh
lib/kokkos/config/kokkos_dev/config-core-cxx11-omp.sh
lib/kokkos/config/kokkos_dev/config-core-dbg-none.sh
lib/kokkos/config/kokkos_dev/config-core-intel-cuda-omp.sh
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lib/kokkos/config/kokkos_dev/config-core-omp.sh
lib/kokkos/config/kokkos_dev/config-core-threads-hwloc.sh
lib/kokkos/config/master_history.txt
lib/kokkos/config/nvcc_wrapper
lib/kokkos/config/snapshot.py
lib/kokkos/config/test_all_sandia
lib/kokkos/config/test_kokkos_master_develop_promotion.sh
lib/kokkos/config/testing_scripts/README
lib/kokkos/config/testing_scripts/jenkins_test_driver
lib/kokkos/config/testing_scripts/obj_size_opt_check
lib/kokkos/config/trilinos-integration/prepare_trilinos_repos.sh
lib/kokkos/containers/CMakeLists.txt
lib/kokkos/containers/cmake/Dependencies.cmake
lib/kokkos/containers/cmake/KokkosContainers_config.h.in
lib/kokkos/containers/performance_tests/CMakeLists.txt
lib/kokkos/containers/performance_tests/Makefile
lib/kokkos/containers/performance_tests/TestCuda.cpp
lib/kokkos/containers/performance_tests/TestDynRankView.hpp
lib/kokkos/containers/performance_tests/TestGlobal2LocalIds.hpp
lib/kokkos/containers/performance_tests/TestMain.cpp
lib/kokkos/containers/performance_tests/TestOpenMP.cpp
lib/kokkos/containers/performance_tests/TestThreads.cpp
lib/kokkos/containers/performance_tests/TestUnorderedMapPerformance.hpp
lib/kokkos/containers/src/CMakeLists.txt
lib/kokkos/containers/src/Kokkos_Bitset.hpp
lib/kokkos/containers/src/Kokkos_DualView.hpp
lib/kokkos/containers/src/Kokkos_DynRankView.hpp
lib/kokkos/containers/src/Kokkos_DynamicView.hpp
lib/kokkos/containers/src/Kokkos_ErrorReporter.hpp
lib/kokkos/containers/src/Kokkos_Functional.hpp
lib/kokkos/containers/src/Kokkos_StaticCrsGraph.hpp
lib/kokkos/containers/src/Kokkos_UnorderedMap.hpp
lib/kokkos/containers/src/Kokkos_Vector.hpp
lib/kokkos/containers/src/impl/Kokkos_Bitset_impl.hpp
lib/kokkos/containers/src/impl/Kokkos_Functional_impl.hpp
lib/kokkos/containers/src/impl/Kokkos_StaticCrsGraph_factory.hpp
lib/kokkos/containers/src/impl/Kokkos_UnorderedMap_impl.cpp
lib/kokkos/containers/src/impl/Kokkos_UnorderedMap_impl.hpp
lib/kokkos/containers/unit_tests/CMakeLists.txt
lib/kokkos/containers/unit_tests/Makefile
lib/kokkos/containers/unit_tests/TestBitset.hpp
lib/kokkos/containers/unit_tests/TestComplex.hpp
lib/kokkos/containers/unit_tests/TestCuda.cpp
lib/kokkos/containers/unit_tests/TestDualView.hpp
lib/kokkos/containers/unit_tests/TestDynViewAPI.hpp
lib/kokkos/containers/unit_tests/TestDynamicView.hpp
lib/kokkos/containers/unit_tests/TestErrorReporter.hpp
lib/kokkos/containers/unit_tests/TestOpenMP.cpp
lib/kokkos/containers/unit_tests/TestSerial.cpp
lib/kokkos/containers/unit_tests/TestStaticCrsGraph.hpp
lib/kokkos/containers/unit_tests/TestThreads.cpp
lib/kokkos/containers/unit_tests/TestUnorderedMap.hpp
lib/kokkos/containers/unit_tests/TestVector.hpp
lib/kokkos/containers/unit_tests/UnitTestMain.cpp
lib/kokkos/core/CMakeLists.txt
lib/kokkos/core/cmake/Dependencies.cmake
lib/kokkos/core/cmake/KokkosCore_config.h.in
lib/kokkos/core/perf_test/CMakeLists.txt
lib/kokkos/core/perf_test/Makefile
lib/kokkos/core/perf_test/PerfTestBlasKernels.hpp
lib/kokkos/core/perf_test/PerfTestCuda.cpp
lib/kokkos/core/perf_test/PerfTestDriver.hpp
lib/kokkos/core/perf_test/PerfTestGramSchmidt.hpp
lib/kokkos/core/perf_test/PerfTestHexGrad.hpp
lib/kokkos/core/perf_test/PerfTestHost.cpp
lib/kokkos/core/perf_test/PerfTestMain.cpp
lib/kokkos/core/perf_test/test_atomic.cpp
lib/kokkos/core/src/CMakeLists.txt
lib/kokkos/core/src/Cuda/Kokkos_CudaExec.hpp
lib/kokkos/core/src/Cuda/Kokkos_CudaSpace.cpp
lib/kokkos/core/src/Cuda/Kokkos_Cuda_Alloc.hpp
lib/kokkos/core/src/Cuda/Kokkos_Cuda_Error.hpp
lib/kokkos/core/src/Cuda/Kokkos_Cuda_Impl.cpp
lib/kokkos/core/src/Cuda/Kokkos_Cuda_Internal.hpp
lib/kokkos/core/src/Cuda/Kokkos_Cuda_Parallel.hpp
lib/kokkos/core/src/Cuda/Kokkos_Cuda_ReduceScan.hpp
lib/kokkos/core/src/Cuda/Kokkos_Cuda_Task.cpp
lib/kokkos/core/src/Cuda/Kokkos_Cuda_Task.hpp
lib/kokkos/core/src/Cuda/Kokkos_Cuda_Vectorization.hpp
lib/kokkos/core/src/Cuda/Kokkos_Cuda_View.hpp
lib/kokkos/core/src/Cuda/Kokkos_Cuda_abort.hpp
lib/kokkos/core/src/KokkosExp_MDRangePolicy.hpp
lib/kokkos/core/src/Kokkos_Array.hpp
lib/kokkos/core/src/Kokkos_Atomic.hpp
lib/kokkos/core/src/Kokkos_Complex.hpp
lib/kokkos/core/src/Kokkos_Concepts.hpp
lib/kokkos/core/src/Kokkos_Core.hpp
lib/kokkos/core/src/Kokkos_Core_fwd.hpp
lib/kokkos/core/src/Kokkos_Cuda.hpp
lib/kokkos/core/src/Kokkos_CudaSpace.hpp
lib/kokkos/core/src/Kokkos_ExecPolicy.hpp
lib/kokkos/core/src/Kokkos_HBWSpace.hpp
lib/kokkos/core/src/Kokkos_HostSpace.hpp
lib/kokkos/core/src/Kokkos_Layout.hpp
lib/kokkos/core/src/Kokkos_Macros.hpp
lib/kokkos/core/src/Kokkos_MemoryPool.hpp
lib/kokkos/core/src/Kokkos_MemoryTraits.hpp
lib/kokkos/core/src/Kokkos_OpenMP.hpp
lib/kokkos/core/src/Kokkos_Pair.hpp
lib/kokkos/core/src/Kokkos_Parallel.hpp
lib/kokkos/core/src/Kokkos_Parallel_Reduce.hpp
lib/kokkos/core/src/Kokkos_Qthread.hpp
lib/kokkos/core/src/Kokkos_ScratchSpace.hpp
lib/kokkos/core/src/Kokkos_Serial.hpp
lib/kokkos/core/src/Kokkos_TaskPolicy.hpp
lib/kokkos/core/src/Kokkos_TaskScheduler.hpp
lib/kokkos/core/src/Kokkos_Threads.hpp
lib/kokkos/core/src/Kokkos_Timer.hpp
lib/kokkos/core/src/Kokkos_Vectorization.hpp
lib/kokkos/core/src/Kokkos_View.hpp
lib/kokkos/core/src/Kokkos_hwloc.hpp
lib/kokkos/core/src/Makefile
lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp
lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.cpp
lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.hpp
lib/kokkos/core/src/OpenMP/Kokkos_OpenMPexec.cpp
lib/kokkos/core/src/OpenMP/Kokkos_OpenMPexec.hpp
lib/kokkos/core/src/Qthread/Kokkos_QthreadExec.cpp
lib/kokkos/core/src/Qthread/Kokkos_QthreadExec.hpp
lib/kokkos/core/src/Qthread/Kokkos_Qthread_Parallel.hpp
lib/kokkos/core/src/Qthread/Kokkos_Qthread_TaskPolicy.cpp
lib/kokkos/core/src/Qthread/Kokkos_Qthread_TaskPolicy.hpp
lib/kokkos/core/src/Qthread/README
lib/kokkos/core/src/Threads/Kokkos_ThreadsExec.cpp
lib/kokkos/core/src/Threads/Kokkos_ThreadsExec.hpp
lib/kokkos/core/src/Threads/Kokkos_ThreadsExec_base.cpp
lib/kokkos/core/src/Threads/Kokkos_ThreadsTeam.hpp
lib/kokkos/core/src/Threads/Kokkos_Threads_Parallel.hpp
lib/kokkos/core/src/impl/CMakeLists.txt
lib/kokkos/core/src/impl/KokkosExp_ViewMapping.hpp
lib/kokkos/core/src/impl/Kokkos_AnalyzePolicy.hpp
lib/kokkos/core/src/impl/Kokkos_Atomic_Assembly.hpp
lib/kokkos/core/src/impl/Kokkos_Atomic_Compare_Exchange_Strong.hpp
lib/kokkos/core/src/impl/Kokkos_Atomic_Decrement.hpp
lib/kokkos/core/src/impl/Kokkos_Atomic_Exchange.hpp
lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_Add.hpp
lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_And.hpp
lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_Or.hpp
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lib/kokkos/core/src/impl/Kokkos_Atomic_Generic.hpp
lib/kokkos/core/src/impl/Kokkos_Atomic_Increment.hpp
lib/kokkos/core/src/impl/Kokkos_Atomic_View.hpp
lib/kokkos/core/src/impl/Kokkos_Atomic_Windows.hpp
lib/kokkos/core/src/impl/Kokkos_BitOps.hpp
lib/kokkos/core/src/impl/Kokkos_CPUDiscovery.cpp
lib/kokkos/core/src/impl/Kokkos_CPUDiscovery.hpp
lib/kokkos/core/src/impl/Kokkos_Core.cpp
lib/kokkos/core/src/impl/Kokkos_Error.cpp
lib/kokkos/core/src/impl/Kokkos_Error.hpp
lib/kokkos/core/src/impl/Kokkos_ExecPolicy.cpp
lib/kokkos/core/src/impl/Kokkos_FunctorAdapter.hpp
lib/kokkos/core/src/impl/Kokkos_HBWSpace.cpp
lib/kokkos/core/src/impl/Kokkos_HostSpace.cpp
lib/kokkos/core/src/impl/Kokkos_Memory_Fence.hpp
lib/kokkos/core/src/impl/Kokkos_OldMacros.hpp
lib/kokkos/core/src/impl/Kokkos_PhysicalLayout.hpp
lib/kokkos/core/src/impl/Kokkos_Profiling_DeviceInfo.hpp
lib/kokkos/core/src/impl/Kokkos_Profiling_Interface.cpp
lib/kokkos/core/src/impl/Kokkos_Profiling_Interface.hpp
lib/kokkos/core/src/impl/Kokkos_Serial.cpp
lib/kokkos/core/src/impl/Kokkos_Serial_Task.cpp
lib/kokkos/core/src/impl/Kokkos_Serial_Task.hpp
lib/kokkos/core/src/impl/Kokkos_SharedAlloc.cpp
lib/kokkos/core/src/impl/Kokkos_SharedAlloc.hpp
lib/kokkos/core/src/impl/Kokkos_StaticAssert.hpp
lib/kokkos/core/src/impl/Kokkos_Synchronic.hpp
lib/kokkos/core/src/impl/Kokkos_Synchronic_Config.hpp
lib/kokkos/core/src/impl/Kokkos_Synchronic_n3998.hpp
lib/kokkos/core/src/impl/Kokkos_Tags.hpp
lib/kokkos/core/src/impl/Kokkos_TaskQueue.hpp
lib/kokkos/core/src/impl/Kokkos_TaskQueue_impl.hpp
lib/kokkos/core/src/impl/Kokkos_Timer.hpp
lib/kokkos/core/src/impl/Kokkos_Traits.hpp
lib/kokkos/core/src/impl/Kokkos_Utilities.hpp
lib/kokkos/core/src/impl/Kokkos_ViewArray.hpp
lib/kokkos/core/src/impl/Kokkos_ViewCtor.hpp
lib/kokkos/core/src/impl/Kokkos_ViewMapping.hpp
lib/kokkos/core/src/impl/Kokkos_ViewTile.hpp
lib/kokkos/core/src/impl/Kokkos_Volatile_Load.hpp
lib/kokkos/core/src/impl/Kokkos_hwloc.cpp
lib/kokkos/core/src/impl/Kokkos_spinwait.cpp
lib/kokkos/core/src/impl/Kokkos_spinwait.hpp
lib/kokkos/core/unit_test/CMakeLists.txt
lib/kokkos/core/unit_test/Makefile
lib/kokkos/core/unit_test/TestAggregate.hpp
lib/kokkos/core/unit_test/TestAtomic.hpp
lib/kokkos/core/unit_test/TestAtomicOperations.hpp
lib/kokkos/core/unit_test/TestAtomicViews.hpp
lib/kokkos/core/unit_test/TestCXX11.hpp
lib/kokkos/core/unit_test/TestCXX11Deduction.hpp
lib/kokkos/core/unit_test/TestCompilerMacros.hpp
lib/kokkos/core/unit_test/TestDefaultDeviceType.cpp
lib/kokkos/core/unit_test/TestDefaultDeviceTypeInit.hpp
lib/kokkos/core/unit_test/TestDefaultDeviceTypeInit_1.cpp
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lib/kokkos/core/unit_test/TestDefaultDeviceTypeInit_11.cpp
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lib/kokkos/core/unit_test/TestDefaultDeviceTypeInit_8.cpp
lib/kokkos/core/unit_test/TestDefaultDeviceTypeInit_9.cpp
lib/kokkos/core/unit_test/TestDefaultDeviceType_a.cpp
lib/kokkos/core/unit_test/TestDefaultDeviceType_b.cpp
lib/kokkos/core/unit_test/TestDefaultDeviceType_c.cpp
lib/kokkos/core/unit_test/TestDefaultDeviceType_d.cpp
lib/kokkos/core/unit_test/TestHWLOC.cpp
lib/kokkos/core/unit_test/TestMDRange.hpp
lib/kokkos/core/unit_test/TestMemoryPool.hpp
lib/kokkos/core/unit_test/TestPolicyConstruction.hpp
lib/kokkos/core/unit_test/TestQthread.cpp
lib/kokkos/core/unit_test/TestRange.hpp
lib/kokkos/core/unit_test/TestReduce.hpp
lib/kokkos/core/unit_test/TestScan.hpp
lib/kokkos/core/unit_test/TestSharedAlloc.hpp
lib/kokkos/core/unit_test/TestSynchronic.cpp
lib/kokkos/core/unit_test/TestSynchronic.hpp
lib/kokkos/core/unit_test/TestTaskScheduler.hpp
lib/kokkos/core/unit_test/TestTeam.hpp
lib/kokkos/core/unit_test/TestTeamVector.hpp
lib/kokkos/core/unit_test/TestTemplateMetaFunctions.hpp
lib/kokkos/core/unit_test/TestTile.hpp
lib/kokkos/core/unit_test/TestUtilities.hpp
lib/kokkos/core/unit_test/TestViewAPI.hpp
lib/kokkos/core/unit_test/TestViewMapping.hpp
lib/kokkos/core/unit_test/TestViewOfClass.hpp
lib/kokkos/core/unit_test/TestViewSpaceAssign.hpp
lib/kokkos/core/unit_test/TestViewSubview.hpp
lib/kokkos/core/unit_test/UnitTestMain.cpp
lib/kokkos/core/unit_test/cuda/TestCuda.hpp
lib/kokkos/core/unit_test/cuda/TestCuda_Atomics.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_Other.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_Reductions_a.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_Reductions_b.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_Spaces.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_SubView_a.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_SubView_b.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_SubView_c01.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_SubView_c02.cpp
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lib/kokkos/core/unit_test/cuda/TestCuda_SubView_c10.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_SubView_c11.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_SubView_c12.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_SubView_c_all.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_Team.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_ViewAPI_a.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_ViewAPI_b.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_ViewAPI_c.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_ViewAPI_d.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_ViewAPI_e.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_ViewAPI_f.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_ViewAPI_g.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_ViewAPI_h.cpp
lib/kokkos/core/unit_test/cuda/TestCuda_ViewAPI_s.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP.hpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_Atomics.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_Other.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_Reductions.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_SubView_a.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_SubView_b.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_SubView_c01.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_SubView_c02.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_SubView_c03.cpp
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lib/kokkos/core/unit_test/openmp/TestOpenMP_SubView_c10.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_SubView_c11.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_SubView_c12.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_SubView_c_all.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_Team.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_ViewAPI_a.cpp
lib/kokkos/core/unit_test/openmp/TestOpenMP_ViewAPI_b.cpp
lib/kokkos/core/unit_test/serial/TestSerial.hpp
lib/kokkos/core/unit_test/serial/TestSerial_Atomics.cpp
lib/kokkos/core/unit_test/serial/TestSerial_Other.cpp
lib/kokkos/core/unit_test/serial/TestSerial_Reductions.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_a.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_b.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_c01.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_c02.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_c03.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_c04.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_c05.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_c06.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_c07.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_c08.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_c09.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_c10.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_c11.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_c12.cpp
lib/kokkos/core/unit_test/serial/TestSerial_SubView_c_all.cpp
lib/kokkos/core/unit_test/serial/TestSerial_Team.cpp
lib/kokkos/core/unit_test/serial/TestSerial_ViewAPI_a.cpp
lib/kokkos/core/unit_test/serial/TestSerial_ViewAPI_b.cpp
lib/kokkos/core/unit_test/threads/TestThreads.hpp
lib/kokkos/core/unit_test/threads/TestThreads_Atomics.cpp
lib/kokkos/core/unit_test/threads/TestThreads_Other.cpp
lib/kokkos/core/unit_test/threads/TestThreads_Reductions.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_a.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_b.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_c01.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_c02.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_c03.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_c04.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_c05.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_c06.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_c07.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_c08.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_c09.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_c10.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_c11.cpp
lib/kokkos/core/unit_test/threads/TestThreads_SubView_c12.cpp
lib/kokkos/core/unit_test/threads/TestThreads_Team.cpp
lib/kokkos/core/unit_test/threads/TestThreads_ViewAPI_a.cpp
lib/kokkos/core/unit_test/threads/TestThreads_ViewAPI_b.cpp
lib/kokkos/doc/Doxyfile
lib/kokkos/doc/Kokkos_PG.pdf
lib/kokkos/doc/build_docs
lib/kokkos/doc/design_notes_space_instances.md
lib/kokkos/doc/index.doc
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tools/msi2lmp/README
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