17Jan17 version files changed by 20Jan17 patch:

doc/html/.buildinfo
doc/html/Manual.html
doc/html/PDF/USER-CGDNA-overview.pdf
doc/html/Section_commands.html
doc/html/Section_packages.html
doc/html/_images/bond_oxdna_fene.jpg
doc/html/bond_class2.html
doc/html/bond_fene.html
doc/html/bond_fene_expand.html
doc/html/bond_harmonic.html
doc/html/bond_harmonic_shift.html
doc/html/bond_harmonic_shift_cut.html
doc/html/bond_hybrid.html
doc/html/bond_morse.html
doc/html/bond_none.html
doc/html/bond_nonlinear.html
doc/html/bond_oxdna_fene.html
doc/html/bond_quartic.html
doc/html/bond_table.html
doc/html/bond_zero.html
doc/html/bonds.html
doc/html/compute_coord_atom.html
doc/html/compute_orientorder_atom.html
doc/html/fix_adapt.html
doc/html/fix_adapt_fep.html
doc/html/fix_addforce.html
doc/html/fix_addtorque.html
doc/html/fix_append_atoms.html
doc/html/fix_atc.html
doc/html/fix_atom_swap.html
doc/html/fix_ave_atom.html
doc/html/fix_ave_chunk.html
doc/html/fix_ave_correlate.html
doc/html/fix_ave_correlate_long.html
doc/html/fix_ave_histo.html
doc/html/fix_ave_time.html
doc/html/fix_aveforce.html
doc/html/fix_balance.html
doc/html/fix_bond_break.html
doc/html/fix_bond_create.html
doc/html/fix_bond_swap.html
doc/html/fix_box_relax.html
doc/html/fix_cmap.html
doc/html/fix_colvars.html
doc/html/fix_controller.html
doc/html/fix_deform.html
doc/html/fix_deposit.html
doc/html/fix_dpd_energy.html
doc/html/fix_drag.html
doc/html/fix_drude.html
doc/html/fix_drude_transform.html
doc/html/fix_dt_reset.html
doc/html/fix_efield.html
doc/html/fix_ehex.html
doc/html/fix_enforce2d.html
doc/html/fix_eos_cv.html
doc/html/fix_eos_table.html
doc/html/fix_eos_table_rx.html
doc/html/fix_evaporate.html
doc/html/fix_external.html
doc/html/fix_flow_gauss.html
doc/html/fix_freeze.html
doc/html/fix_gcmc.html
doc/html/fix_gld.html
doc/html/fix_gle.html
doc/html/fix_gravity.html
doc/html/fix_grem.html
doc/html/fix_halt.html
doc/html/fix_heat.html
doc/html/fix_imd.html
doc/html/fix_indent.html
doc/html/fix_ipi.html
doc/html/fix_langevin.html
doc/html/fix_langevin_drude.html
doc/html/fix_langevin_eff.html
doc/html/fix_lb_fluid.html
doc/html/fix_lb_momentum.html
doc/html/fix_lb_pc.html
doc/html/fix_lb_rigid_pc_sphere.html
doc/html/fix_lb_viscous.html
doc/html/fix_lineforce.html
doc/html/fix_manifoldforce.html
doc/html/fix_meso.html
doc/html/fix_meso_stationary.html
doc/html/fix_momentum.html
doc/html/fix_move.html
doc/html/fix_mscg.html
doc/html/fix_msst.html
doc/html/fix_neb.html
doc/html/fix_nh.html
doc/html/fix_nh_eff.html
doc/html/fix_nph_asphere.html
doc/html/fix_nph_body.html
doc/html/fix_nph_sphere.html
doc/html/fix_nphug.html
doc/html/fix_npt_asphere.html
doc/html/fix_npt_body.html
doc/html/fix_npt_sphere.html
doc/html/fix_nve.html
doc/html/fix_nve_asphere.html
doc/html/fix_nve_asphere_noforce.html
doc/html/fix_nve_body.html
doc/html/fix_nve_dot.html
doc/html/fix_nve_dotc_langevin.html
doc/html/fix_nve_eff.html
doc/html/fix_nve_limit.html
doc/html/fix_nve_line.html
doc/html/fix_nve_manifold_rattle.html
doc/html/fix_nve_noforce.html
doc/html/fix_nve_sphere.html
doc/html/fix_nve_tri.html
doc/html/fix_nvk.html
doc/html/fix_nvt_asphere.html
doc/html/fix_nvt_body.html
doc/html/fix_nvt_manifold_rattle.html
doc/html/fix_nvt_sllod.html
doc/html/fix_nvt_sllod_eff.html
doc/html/fix_nvt_sphere.html
doc/html/fix_oneway.html
doc/html/fix_orient.html
doc/html/fix_phonon.html
doc/html/fix_pimd.html
doc/html/fix_planeforce.html
doc/html/fix_poems.html
doc/html/fix_pour.html
doc/html/fix_press_berendsen.html
doc/html/fix_print.html
doc/html/fix_property_atom.html
doc/html/fix_qbmsst.html
doc/html/fix_qeq.html
doc/html/fix_qeq_comb.html
doc/html/fix_qeq_reax.html
doc/html/fix_qmmm.html
doc/html/fix_qtb.html
doc/html/fix_reax_bonds.html
doc/html/fix_reaxc_species.html
doc/html/fix_recenter.html
doc/html/fix_restrain.html
doc/html/fix_rigid.html
doc/html/fix_rx.html
doc/html/fix_saed_vtk.html
doc/html/fix_setforce.html
doc/html/fix_shake.html
doc/html/fix_shardlow.html
doc/html/fix_smd.html
doc/html/fix_smd_adjust_dt.html
doc/html/fix_smd_integrate_tlsph.html
doc/html/fix_smd_integrate_ulsph.html
doc/html/fix_smd_move_triangulated_surface.html
doc/html/fix_smd_setvel.html
doc/html/fix_smd_wall_surface.html
doc/html/fix_spring.html
doc/html/fix_spring_chunk.html
doc/html/fix_spring_rg.html
doc/html/fix_spring_self.html
doc/html/fix_srd.html
doc/html/fix_store_force.html
doc/html/fix_store_state.html
doc/html/fix_temp_berendsen.html
doc/html/fix_temp_csvr.html
doc/html/fix_temp_rescale.html
doc/html/fix_temp_rescale_eff.html
doc/html/fix_tfmc.html
doc/html/fix_thermal_conductivity.html
doc/html/fix_ti_spring.html
doc/html/fix_tmd.html
doc/html/fix_ttm.html
doc/html/fix_tune_kspace.html
doc/html/fix_vector.html
doc/html/fix_viscosity.html
doc/html/fix_viscous.html
doc/html/fix_wall.html
doc/html/fix_wall_gran.html
doc/html/fix_wall_gran_region.html
doc/html/fix_wall_piston.html
doc/html/fix_wall_reflect.html
doc/html/fix_wall_region.html
doc/html/fix_wall_srd.html
doc/html/fixes.html
doc/html/genindex.html
doc/html/kspace_style.html
doc/html/objects.inv
doc/html/pair_adp.html
doc/html/pair_agni.html
doc/html/pair_airebo.html
doc/html/pair_awpmd.html
doc/html/pair_beck.html
doc/html/pair_body.html
doc/html/pair_bop.html
doc/html/pair_born.html
doc/html/pair_brownian.html
doc/html/pair_buck.html
doc/html/pair_buck_long.html
doc/html/pair_charmm.html
doc/html/pair_class2.html
doc/html/pair_colloid.html
doc/html/pair_comb.html
doc/html/pair_coul.html
doc/html/pair_coul_diel.html
doc/html/pair_cs.html
doc/html/pair_dipole.html
doc/html/pair_dpd.html
doc/html/pair_dpd_fdt.html
doc/html/pair_dsmc.html
doc/html/pair_eam.html
doc/html/pair_edip.html
doc/html/pair_eff.html
doc/html/pair_eim.html
doc/html/pair_exp6_rx.html
doc/html/pair_gauss.html
doc/html/pair_gayberne.html
doc/html/pair_gran.html
doc/html/pair_gromacs.html
doc/html/pair_hbond_dreiding.html
doc/html/pair_hybrid.html
doc/html/pair_kim.html
doc/html/pair_lcbop.html
doc/html/pair_line_lj.html
doc/html/pair_list.html
doc/html/pair_lj.html
doc/html/pair_lj96.html
doc/html/pair_lj_cubic.html
doc/html/pair_lj_expand.html
doc/html/pair_lj_long.html
doc/html/pair_lj_sf.html
doc/html/pair_lj_smooth.html
doc/html/pair_lj_smooth_linear.html
doc/html/pair_lj_soft.html
doc/html/pair_lubricate.html
doc/html/pair_lubricateU.html
doc/html/pair_mdf.html
doc/html/pair_meam.html
doc/html/pair_meam_spline.html
doc/html/pair_meam_sw_spline.html
doc/html/pair_mgpt.html
doc/html/pair_mie.html
doc/html/pair_morse.html
doc/html/pair_multi_lucy.html
doc/html/pair_multi_lucy_rx.html
doc/html/pair_nb3b_harmonic.html
doc/html/pair_nm.html
doc/html/pair_none.html
doc/html/pair_oxdna_excv.html
doc/html/pair_peri.html
doc/html/pair_polymorphic.html
doc/html/pair_quip.html
doc/html/pair_reax.html
doc/html/pair_reax_c.html
doc/html/pair_resquared.html
doc/html/pair_sdk.html
doc/html/pair_smd_hertz.html
doc/html/pair_smd_tlsph.html
doc/html/pair_smd_triangulated_surface.html
doc/html/pair_smd_ulsph.html
doc/html/pair_smtbq.html
doc/html/pair_snap.html
doc/html/pair_soft.html
doc/html/pair_sph_heatconduction.html
doc/html/pair_sph_idealgas.html
doc/html/pair_sph_lj.html
doc/html/pair_sph_rhosum.html
doc/html/pair_sph_taitwater.html
doc/html/pair_sph_taitwater_morris.html
doc/html/pair_srp.html
doc/html/pair_sw.html
doc/html/pair_table.html
doc/html/pair_table_rx.html
doc/html/pair_tersoff.html
doc/html/pair_tersoff_mod.html
doc/html/pair_tersoff_zbl.html
doc/html/pair_thole.html
doc/html/pair_tri_lj.html
doc/html/pair_vashishta.html
doc/html/pair_yukawa.html
doc/html/pair_yukawa_colloid.html
doc/html/pair_zbl.html
doc/html/pair_zero.html
doc/html/pairs.html
doc/src/Eqs/bond_oxdna_fene.jpg
doc/src/Eqs/bond_oxdna_fene.tex
doc/src/Manual.txt
doc/src/PDF/USER-CGDNA-overview.pdf
doc/src/Section_commands.txt
doc/src/Section_packages.txt
doc/src/bond_oxdna_fene.txt
doc/src/bonds.txt
doc/src/compute_coord_atom.txt
doc/src/compute_orientorder_atom.txt
doc/src/fix_nve_dot.txt
doc/src/fix_nve_dotc_langevin.txt
doc/src/fixes.txt
doc/src/kspace_style.txt
doc/src/lammps.book
doc/src/pair_oxdna_excv.txt
doc/src/pairs.txt
examples/USER/cgdna/README
examples/USER/cgdna/examples/duplex1/data.duplex1
examples/USER/cgdna/examples/duplex1/input.duplex1
examples/USER/cgdna/examples/duplex1/log.9Jan17.duplex1.g++.1
examples/USER/cgdna/examples/duplex1/log.9Jan17.duplex1.g++.4
examples/USER/cgdna/examples/duplex2/data.duplex2
examples/USER/cgdna/examples/duplex2/input.duplex2
examples/USER/cgdna/examples/duplex2/log.9Jan17.duplex2.g++.1
examples/USER/cgdna/examples/duplex2/log.9Jan17.duplex2.g++.4
examples/USER/cgdna/util/generate_input.py
examples/USER/cgdna/util/input.ref
examples/USER/cgdna/util/sequence.txt
src/Depend.sh
src/KOKKOS/domain_kokkos.cpp
src/KOKKOS/modify_kokkos.cpp
src/KOKKOS/nbin_kokkos.cpp
src/KOKKOS/verlet_kokkos.cpp
src/MC/fix_atom_swap.cpp
src/Makefile
src/USER-CGDNA/Install.sh
src/USER-CGDNA/README
src/USER-CGDNA/bond_oxdna_fene.cpp
src/USER-CGDNA/bond_oxdna_fene.h
src/USER-CGDNA/fix_nve_dot.cpp
src/USER-CGDNA/fix_nve_dot.h
src/USER-CGDNA/fix_nve_dotc_langevin.cpp
src/USER-CGDNA/fix_nve_dotc_langevin.h
src/USER-CGDNA/mf_oxdna.h
src/USER-CGDNA/pair_oxdna_coaxstk.cpp
src/USER-CGDNA/pair_oxdna_coaxstk.h
src/USER-CGDNA/pair_oxdna_excv.cpp
src/USER-CGDNA/pair_oxdna_excv.h
src/USER-CGDNA/pair_oxdna_hbond.cpp
src/USER-CGDNA/pair_oxdna_hbond.h
src/USER-CGDNA/pair_oxdna_stk.cpp
src/USER-CGDNA/pair_oxdna_stk.h
src/USER-CGDNA/pair_oxdna_xstk.cpp
src/USER-CGDNA/pair_oxdna_xstk.h
src/USER-DPD/nbin_ssa.cpp
src/USER-DPD/npair_half_bin_newton_ssa.cpp
src/USER-DPD/npair_halffull_newton_ssa.cpp
src/USER-DPD/pair_dpd_fdt.cpp
src/USER-DPD/pair_dpd_fdt.h
src/USER-DPD/pair_dpd_fdt_energy.cpp
src/USER-DPD/pair_dpd_fdt_energy.h
src/USER-INTEL/nbin_intel.cpp
src/USER-INTEL/npair_intel.cpp
src/compute_coord_atom.cpp
src/compute_orientorder_atom.cpp
src/compute_rdf.cpp
src/nbin.cpp
src/nbin.h
src/nbin_standard.cpp
src/neighbor.cpp
src/npair.cpp
src/npair.h
src/nstencil.cpp
src/nstencil.h
src/version.h