Index

A | B | C | D | E | F | G | I | J | K | L | M | N | P | Q | R | S | T | U | V | W

A

angle\_coeff
angle\_style
angle\_style charmm
angle\_style class2
angle\_style cosine
angle\_style cosine/delta
angle\_style cosine/periodic
angle\_style cosine/shift
angle\_style cosine/shift/exp
angle\_style cosine/squared
angle\_style dipole
angle\_style fourier
angle\_style fourier/simple
angle\_style harmonic
angle\_style hybrid
angle\_style none
angle\_style quartic
angle\_style sdk
angle\_style table
angle\_style zero
atom\_modify
atom\_style

B

balance
bond\_coeff
bond\_style
bond\_style class2
bond\_style fene
bond\_style fene/expand
bond\_style harmonic
bond\_style harmonic/shift
bond\_style harmonic/shift/cut
bond\_style hybrid
bond\_style morse
bond\_style none
bond\_style nonlinear
bond\_style oxdna/fene
bond\_style quartic
bond\_style table
bond\_style zero
bond\_write
boundary
box

C

change\_box
clear
comm\_modify
comm\_style
compute
compute ackland/atom
compute angle
compute angle/local
compute angmom/chunk
compute basal/atom
compute body/local
compute bond
compute bond/local
compute centro/atom
compute chunk/atom
compute cluster/atom
compute cna/atom
compute com
compute com/chunk
compute contact/atom
compute coord/atom
compute damage/atom
compute dihedral
compute dihedral/local
compute dilatation/atom
compute dipole/chunk
compute displace/atom
compute dpd
compute dpd/atom
compute erotate/asphere
compute erotate/rigid
compute erotate/sphere
compute erotate/sphere/atom
compute event/displace
compute fep
compute force/tally
compute global/atom
compute group/group
compute gyration
compute gyration/chunk
compute heat/flux
compute hexorder/atom
compute improper
compute improper/local
compute inertia/chunk
compute ke
compute ke/atom
compute ke/atom/eff
compute ke/eff
compute ke/rigid
compute meso/e/atom
compute meso/rho/atom
compute meso/t/atom
compute msd
compute msd/chunk
compute msd/nongauss
compute omega/chunk
compute orientorder/atom
compute pair
compute pair/local
compute pe
compute pe/atom
compute plasticity/atom
compute pressure
compute property/atom
compute property/chunk
compute property/local
compute rdf
compute reduce
compute rigid/local
compute saed
compute slice
compute smd/contact/radius
compute smd/damage
compute smd/hourglass/error
compute smd/internal/energy
compute smd/plastic/strain
compute smd/plastic/strain/rate
compute smd/rho
compute smd/tlsph/defgrad
compute smd/tlsph/dt
compute smd/tlsph/num/neighs
compute smd/tlsph/shape
compute smd/tlsph/strain
compute smd/tlsph/strain/rate
compute smd/tlsph/stress
compute smd/ulsph/num/neighs
compute smd/ulsph/strain
compute smd/ulsph/strain/rate
compute smd/ulsph/stress
compute smd/vol
compute sna/atom
compute stress/atom
compute temp
compute temp/asphere
compute temp/body
compute temp/chunk
compute temp/com
compute temp/cs
compute temp/deform
compute temp/deform/eff
compute temp/drude
compute temp/eff
compute temp/partial
compute temp/profile
compute temp/ramp
compute temp/region
compute temp/region/eff
compute temp/rotate
compute temp/sphere
compute ti
compute torque/chunk
compute vacf
compute vcm/chunk
compute voronoi/atom
compute xrd
compute\_modify
create\_atoms
create\_bonds
create\_box

D

delete\_atoms
delete\_bonds
dielectric
dihedral\_coeff
dihedral\_style
dihedral\_style charmm
dihedral\_style class2
dihedral\_style cosine/shift/exp
dihedral\_style fourier
dihedral\_style harmonic
dihedral\_style helix
dihedral\_style hybrid
dihedral\_style multi/harmonic
dihedral\_style nharmonic
dihedral\_style none
dihedral\_style opls
dihedral\_style quadratic
dihedral\_style spherical
dihedral\_style table
dihedral\_style zero
dimension
displace\_atoms
dump
dump custom/vtk
dump h5md
dump image
dump molfile
dump nc
dump\_modify

E

echo

F

fix
fix adapt
fix adapt/fep
fix addforce
fix addtorque
fix append/atoms
fix atc
fix atom/swap
fix ave/atom
fix ave/chunk
fix ave/correlate
fix ave/correlate/long
fix ave/histo
fix ave/time
fix aveforce
fix balance
fix bond/break
fix bond/create
fix bond/swap
fix box/relax
fix cmap
fix colvars
fix controller
fix deform
fix deposit
fix dpd/energy
fix drag
fix drude
fix drude/transform/direct
fix dt/reset
fix efield
fix ehex
fix enforce2d
fix eos/cv
fix eos/table
fix eos/table/rx
fix evaporate
fix external
fix filter/corotate
fix flow/gauss
fix freeze
fix gcmc
fix gld
fix gle
fix gravity
fix grem
fix halt
fix heat
fix imd
fix indent
fix ipi
fix langevin
fix langevin/drude
fix langevin/eff
fix lb/fluid
fix lb/momentum
fix lb/pc
fix lb/rigid/pc/sphere
fix lb/viscous
fix lineforce
fix manifoldforce
fix meso
fix meso/stationary
fix momentum
fix move
fix mscg
fix msst
fix neb
fix nph/asphere
fix nph/body
fix nph/sphere
fix nphug
fix npt/asphere
fix npt/body
fix npt/sphere
fix nve
fix nve/asphere
fix nve/asphere/noforce
fix nve/body
fix nve/dot
fix nve/dotc/langevin
fix nve/eff
fix nve/limit
fix nve/line
fix nve/manifold/rattle
fix nve/noforce
fix nve/sphere
fix nve/tri
fix nvk
fix nvt
fix nvt/asphere
fix nvt/body
fix nvt/eff
fix nvt/manifold/rattle
fix nvt/sllod
fix nvt/sllod/eff
fix nvt/sphere
fix oneway
fix orient/fcc
fix phonon
fix pimd
fix planeforce
fix pour
fix press/berendsen
fix print
fix property/atom
fix qbmsst
fix qeq/comb
fix qeq/point
fix qeq/reax
fix qmmm
fix qtb
fix reax/bonds
fix reax/c/species
fix recenter
fix restrain
fix rigid
fix rx
fix saed/vtk
fix setforce
fix shake
fix shardlow
fix smd
fix smd/adjust\_dt
fix smd/integrate\_tlsph
fix smd/integrate\_ulsph
fix smd/move\_tri\_surf
fix smd/setvel
fix smd/wall\_surface
fix spring
fix spring/chunk
fix spring/rg
fix spring/self
fix srd
fix store/force
fix store/state
fix temp/berendsen
fix temp/csvr
fix temp/rescale
fix temp/rescale/eff
fix tfmc
fix thermal/conductivity
fix ti/spring
fix tmd
fix ttm
fix tune/kspace
fix vector
fix viscosity
fix viscous
fix wall/gran
fix wall/gran/region
fix wall/lj93
fix wall/piston
fix wall/reflect
fix wall/region
fix wall/srd
fix\_modify

G

group
group2ndx

I

if
improper\_coeff
improper\_style
improper\_style class2
improper\_style cossq
improper\_style cvff
improper\_style distance
improper\_style fourier
improper\_style harmonic
improper\_style hybrid
improper\_style none
improper\_style ring
improper\_style umbrella
improper\_style zero
include
info

J

jump

K

kspace\_modify
kspace\_style

L

label
lattice
log

M

mass
min\_modify
min\_style
minimize
molecule

N

neb
neigh\_modify
neighbor
newton
next

P

package
pair\_coeff
pair\_modify
pair\_style
pair\_style adp
pair\_style agni
pair\_style airebo
pair\_style awpmd/cut
pair\_style beck
pair\_style body
pair\_style bop
pair\_style born
pair\_style born/coul/long/cs
pair\_style brownian
pair\_style buck
pair\_style buck/long/coul/long
pair\_style colloid
pair\_style comb
pair\_style coul/cut
pair\_style coul/diel
pair\_style dpd
pair\_style dpd/fdt
pair\_style dsmc
pair\_style eam
pair\_style edip
pair\_style eff/cut
pair\_style eim
pair\_style exp6/rx
pair\_style gauss
pair\_style gayberne
pair\_style gran/hooke
pair\_style hbond/dreiding/lj
pair\_style hybrid
pair\_style kim
pair\_style kolmogorov/crespi/z
pair\_style lcbop
pair\_style line/lj
pair\_style list
pair\_style lj/charmm/coul/charmm
pair\_style lj/class2
pair\_style lj/cubic
pair\_style lj/cut
pair\_style lj/cut/dipole/cut
pair\_style lj/cut/soft
pair\_style lj/expand
pair\_style lj/gromacs
pair\_style lj/long/coul/long
pair\_style lj/mdf
pair\_style lj/sdk
pair\_style lj/sf
pair\_style lj/smooth
pair\_style lj/smooth/linear
pair\_style lj96/cut
pair\_style lubricate
pair\_style lubricateU
pair\_style meam
pair\_style mgpt
pair\_style mie/cut
pair\_style morse
pair\_style multi/lucy
pair\_style multi/lucy/rx
pair\_style nb3b/harmonic
pair\_style nm/cut
pair\_style none
pair\_style oxdna/excv
pair\_style peri/pmb
pair\_style polymorphic
pair\_style quip
pair\_style reax
pair\_style reax/c
pair\_style resquared
pair\_style smd/hertz
pair\_style smd/tlsph
pair\_style smd/tri\_surface
pair\_style smd/ulsph
pair\_style smtbq
pair\_style snap
pair\_style soft
pair\_style sph/heatconduction
pair\_style sph/idealgas
pair\_style sph/lj
pair\_style sph/rhosum
pair\_style sph/taitwater
pair\_style sph/taitwater/morris
pair\_style srp
pair\_style sw
pair\_style table
pair\_style table/rx
pair\_style tersoff
pair\_style tersoff/mod
pair\_style tersoff/zbl
pair\_style thole
pair\_style tri/lj
pair\_style vashishta
pair\_style yukawa
pair\_style yukawa/colloid
pair\_style zbl
pair\_style zero
pair\_write
partition
prd
print
processors
python

Q

quit

R

read\_data
read\_dump
read\_restart
region
replicate
rerun
reset\_timestep
restart
run
run\_style

S

set
shell
special\_bonds
suffix

T

tad
temper
temper/grem
thermo
thermo\_modify
thermo\_style
timer
timestep

U

uncompute
undump
unfix
units

V

variable
velocity

W

write\_coeff
write\_data
write\_dump
write\_restart